Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3686 250 2e-61 seq8161 96.9 3e-15 seq3553 93.3 4e-14 >seq3686 Length=1345 Score = 250 bits (276), Expect = 2e-61 Identities = 613/912 (67%), Gaps = 23/912 (3%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 264 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 321 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| ||| || || Sbjct 322 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 381 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| || ||||| | ||| Sbjct 382 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 441 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTATTAA 13038 |||| ||||||||||| || ||||| || ||| || || | |||||||| ||||| Sbjct 442 AATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 500 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| | ||| | |||||| ||||||||||| ||||||| Sbjct 501 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 560 Query 13099 GTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 | | | || | ||| ||| | ||| | | ||| || || | ||| Sbjct 561 ATTTTGAACAACCTCTTCTGGTAATTTAT--TTTCCAACAAGCTATAA-ATTAAACAATT 617 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 |||||| ||| ||||||||||||||||| || | || || |||||||| ||| | Sbjct 618 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 677 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 | | ||||||||| ||||||||| ||| ||| || ||| |||||||| Sbjct 678 TAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCC 737 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| || |||| |||| | |||||| || | | | | | | | |||||| Sbjct 738 TTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCCA 794 Query 13336 CTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 || ||||| |||||| || |||| || | | |||||||| || || | ||||| Sbjct 795 TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATGAAATA 853 Query 13395 AATAAtttttttC-CTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 ||| || | || ||| || || ||||||| |||| || ||||| ||||| |||| Sbjct 854 AAT--TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTC 911 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 || || |||||||| | |||||||| ||| ||||||| | | || || || || Sbjct 912 AGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTG 971 Query 13513 AACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 ||||| ||||| || || ||||| ||||| ||||| || |||||||| |||| Sbjct 972 TACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAA 1030 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 |||| || || | || || ||||| | |||||| ||| | || ||| | ||| Sbjct 1031 AAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTT 1090 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||||| |||||||||||| || ||| | |||||||| || || |||| || |||| Sbjct 1091 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1150 Query 13692 ACATCATCCATA 13703 | | |||||| Sbjct 1151 AAAAATTCCATA 1162 >seq8161 Length=638 Score = 96.9 bits (106), Expect = 3e-15 Identities = 168/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 541 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 484 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| ||| || || Sbjct 483 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 424 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| || ||||| | ||| Sbjct 423 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 364 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC-ACAGTTCATTCCTATTAA 13038 |||| ||||||||||| || ||||| || || ||| || | |||||||| ||||| Sbjct 363 AATCGATCAGCAACAAATTCAATGTATTGAGACA-TAAGTCTTGAATTCATTCCAATTAA 305 >seq3553 Length=1395 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 1175 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 1232 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| ||| || || Sbjct 1233 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1292 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| || ||||| | ||| Sbjct 1293 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 1352 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTG 13008 |||| ||||||||||| || ||||| || Sbjct 1353 AATCGATCAGCAACAAATTCAATGTATTG 1381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430926249727380