Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq76 226 3e-54 seq252 188 9e-43 >seq76 Length=8655 Score = 226 bits (250), Expect = 3e-54 Identities = 416/604 (69%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 7140 AATTTTAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACGATATTT 7081 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 7080 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAA 7021 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| ||| ||||||||||| ||| || Sbjct 7020 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACCGGGAAAACATTAATAGCTAGA 6961 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | || || | | || ||| |||||| | ||||| |||||| ||| Sbjct 6960 CAAATAGGTAAAACATTAAATGCAAGAGAACCG--AAAATTATCAATGGGCCTGAAATAT 6903 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || || || |||||| | || |||| ||| || | || || ||| | ||||||||| Sbjct 6902 TAAATAAGTACGTAGGTCAATCTGAAGAAAATATTCGTAACTTATTTAAAGAGGCTGAAT 6843 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGATGAGAT 164747 || | ||| || | || || | | | ||||||| ||||| | || |||||||| Sbjct 6842 TGGAGTATAAGCAATCTGG-AGAG-AATTCATTATTACATATTATTATATTAGATGAGAT 6785 Query 164748 AGATGCTCTTT---GCAAAAAACGTGGTGAT-AATAT-----------TATTCATGATGC 164792 |||||| ||| | ||| | || ||| | || | | | ||||| Sbjct 6784 AGATGCAATTTGTCGACAAAGAGGTAGTGCTGCATCTAGTGGATCAGGTGTAAATGATAG 6725 Query 164793 AGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 | |||||||| || | || ||||||||||| ||| | ||||||||||| || | Sbjct 6724 TATAGTTAATCAATTATTATCAAAAATAGATGGAGTAAATAGTTTAAATAATATACTATT 6665 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | |||||||| ||| || |||||||| ||||| || || ||| |||| |||||||| Sbjct 6664 AATTGGTATGACAAACAGAATAGATTTAATCGATGAAGCATTGTTAAGACCAGGTCGATT 6605 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 ||||| | || |||||| ||||||| | |||||||| || ||||||| ||||| | Sbjct 6604 TGAATTACATATTGAAATATCATTACCCAATAAAGAAGGTCGAATTCAAATATTAAATAT 6545 Query 164973 TCAT 164976 |||| Sbjct 6544 TCAT 6541 >seq252 Length=6430 Score = 188 bits (208), Expect = 9e-43 Identities = 428/630 (68%), Gaps = 23/630 (4%) Strand=Plus/Plus Query 6798 TGATCGAGTTAATTGTTCTTTTATAGCTTTTAT-ATGATCTAAATAAATATGAGCATCTC 6856 || || | |||| || |||||| |||||| | ||||| ||||| |||||||| || Sbjct 5029 TGTTCTATTTAACTGGACTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTC 5087 Query 6857 CTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTA 6916 | | ||| ||||||||| |||||| | || | |||| || || | |||||| | Sbjct 5088 CCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAA 5147 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 ||| | ||| ||||| | ||| || || ||||| | || | ||| |||||||||| Sbjct 5148 ATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGAT 5207 Query 6977 AACAT-TGACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGA 7035 |||| ||| ||||| | || | | ||||||||||||| || | |||||| ||| Sbjct 5208 -ACATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGA 5266 Query 7036 GGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA--AATACGTCTAT 7093 ||||| | ||||||| ||| | |||||| ||| ||| || ||| |||||| Sbjct 5267 GGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA- 5323 Query 7094 CATTTGGATTTGTTTTTAATT-TTGTTATAATTATTTGTAATTGATCTATACCCTGACCT 7152 ||| | | | |||||||||| ||||||| ||| ||| ||||| | ||| | | || Sbjct 5324 CATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCT 5383 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 | ||||| || ||| || | |||| | ||| ||||| || ||||||||||| || ||| Sbjct 5384 TTATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAA 5443 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT 7270 || |||||||| ||| |||| | ||| || | ||||| | || |||| | Sbjct 5444 ATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATT--ATCTAAAAACTCTC 5501 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTG 7327 ||| |||| ||| ||||| || ||| ||||| | |||| |||| ||||| Sbjct 5502 TTGTCCCATTAGCTTCCCATATTCTTACGTTTTTTTCTAATAATGTATTT---CCATTTG 5558 Query 7328 TAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTG 7387 | ||| | | ||||||| | ||||| | || || | ||| | | |||||| Sbjct 5559 TTTCTCCCCTTATAAACCATAGCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTG 5618 Query 7388 TAGTGAATAAAGGGA---ATGTACTTAAAT 7414 | || ||||| || | || |||||||| Sbjct 5619 TTGTTAATAATGGAAAATATTCACTTAAAT 5648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595792376604000