Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3686 217 2e-51 seq8161 123 3e-23 seq3553 122 9e-23 >seq3686 Length=1345 Score = 217 bits (240), Expect = 2e-51 Identities = 620/940 (66%), Gaps = 23/940 (2%) Strand=Plus/Plus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 256 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 312 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 313 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 372 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| ||||| | Sbjct 373 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAA 432 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 433 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATT 492 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 493 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 552 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAAT----AATTGTTTAAACAT 21471 || ||||||| | | | | | || || || | | || || | || Sbjct 553 TTAACTATATTTTGAA--CAACCTCTTCT--GGTAATTTATTTTCCAACAAGCTATAAAT 608 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||| |||||| || || |||||||| ||||| || ||||||||| |||||| Sbjct 609 TAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGT 668 Query 21532 TAAACCGGGCA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAA 21589 |||||| | | || || | | ||||| ||||||||||||| | |||| || || | Sbjct 669 TAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTG-CACAAAAACTTCCACTA 726 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || || || || || ||| || || | || |||| | | | || ||| | | Sbjct 727 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AG-TTCGT-A 783 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 || ||||||||| |||||||| ||| || | ||| || || | |||||| Sbjct 784 TCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATA 843 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || | || | || | | || | |||| | || |||| Sbjct 844 GCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTA 903 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || ||||||| ||||||||||| | ||||| ||||| | ||||| | | ||| || Sbjct 904 TAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAA-CTTTTTGGCTTC 962 Query 21830 GAACATT-GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | ||| | || || ||||| ||| || ||||| ||||||||||||||| Sbjct 963 AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACT 1022 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| | | || ||||||||||| | ||| || | ||||||||| Sbjct 1023 AGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTC 1082 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 | ||| ||||| |||||||||||| |||||||| |||||||| || ||| Sbjct 1083 AAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGC 1142 Query 22009 CTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 |||||||| | | |||| | ||| ||| || || ||| Sbjct 1143 TTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGA 1182 >seq8161 Length=638 Score = 123 bits (136), Expect = 3e-23 Identities = 179/248 (72%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 549 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 493 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 492 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 433 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| ||||| | Sbjct 432 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAA 373 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 372 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATT 313 Query 21356 CCGATCAA 21363 || || || Sbjct 312 CCAATTAA 305 >seq3553 Length=1395 Score = 122 bits (134), Expect = 9e-23 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 1167 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1223 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 1224 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1283 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| ||||| | Sbjct 1284 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAA 1343 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACAT 21339 | |||||||| ||| || |||||||| || |||||| |||| Sbjct 1344 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531829724755600