Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2587 210 3e-49 seq3686 168 8e-37 >seq2587 Length=1884 Score = 210 bits (232), Expect = 3e-49 Identities = 695/1068 (65%), Gaps = 42/1068 (4%) Strand=Plus/Plus Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62489 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 62546 |||| ||||||| |||| | ||| | |||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 62603 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 62662 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 1185 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 1186 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 1245 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 1246 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 1305 Query 62841 TCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAAGGCA 62894 || | | ||| ||||| ||| | ||||| ||||| || || ||| Sbjct 1306 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 1365 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 1366 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 1425 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 1426 CATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 1485 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCA 63073 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 1486 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCA 1545 Query 63074 GACGACTCGAGCCTTTATTATAGATTTGTATCTC----CTTTCTCTTTCGTATAGTGTAT 63129 | || | || | || | ||| | || | ||||| ||||||| ||||| Sbjct 1546 TAAATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTAT 1602 Query 63130 ACAA-TCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA- 63187 | || | ||| || || || ||||| | || || |||||||| | || || Sbjct 1603 ATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCAC 1662 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTC-GTTTCATAAAGAGATCAGGAATCCAAA 63246 ||| || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| Sbjct 1663 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAA 1722 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 ||| ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | Sbjct 1723 TAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTA 1782 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 || | | |||||| |||||||| ||||| | |||| || | || | || Sbjct 1783 AAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAA------AAGAACTTT 1836 Query 63367 TGTT----TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63410 | || ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1837 TCTTTTCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 168 bits (186), Expect = 8e-37 Identities = 324/473 (68%), Gaps = 6/473 (1%) Strand=Plus/Plus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||||| ||||||||| | | || |||| ||| || |||||||| || ||| Sbjct 691 TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCA 750 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 33501 || | || ||| || || || | | |||| |||||| || ||||| Sbjct 751 TTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAAT 810 Query 33502 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33561 || || ||||||| || || |||| || |||| ||| | || | | || || Sbjct 811 GCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTC 870 Query 33562 CTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 33621 ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 871 TCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACA 930 Query 33622 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681 || || ||||| | || || | | || || | || ||||||||| | ||||| | Sbjct 931 GCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAAT--T 988 Query 33682 TCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33739 | | || |||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 989 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1048 Query 33740 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 33798 ||||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| | Sbjct 1049 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1107 Query 33799 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 |||| |||||| | ||||||||||| ||||| || |||||||| | ||||| Sbjct 1108 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCA 1160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863958680400