Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq252 161 3e-34 seq2587 84.2 6e-11 >seq252 Length=6430 Score = 161 bits (178), Expect = 3e-34 Identities = 460/694 (66%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 5757 GAATATCAATATTTAAATATTATATATGATATAATAATGCATGGA-AATAAACAAGATGA 5699 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 5698 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 5639 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||||||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 5638 AT--ATTTTCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 5582 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 || |||||||| | ||| ||||||| |||| | | || |||||| |||| ||| Sbjct 5581 GCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAACGTAAGAAT 5522 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | ||||| || | || ||| ||||| | | || | | || | | || Sbjct 5521 ATGGGAAGCTAATGGGACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 5465 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| | || ||| ||||||||||||||||| | ||||||||||| || || | Sbjct 5464 AGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATAC 5405 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||||| | || || || | | || |||||| ||| | ||| | || || Sbjct 5404 AGATATGCATG-CTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATT 5346 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| ||| | || || | | | || |||||| | |||||||||| ||| | | Sbjct 5345 TAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 5286 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || |||||||| | || || |||||| || | || || |||||||| || || | Sbjct 5285 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 5226 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| ||||| |||| | |||||||||||||| || |||| Sbjct 5225 AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATA 5166 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 5165 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 5106 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || || || | ||| |||| |||||||| Sbjct 5105 AATTTATACATGTATTGGGAAATGCTCATGTTTA 5072 >seq2587 Length=1884 Score = 84.2 bits (92), Expect = 6e-11 Identities = 161/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 363797 ATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATC 363856 |||| || || || || || || ||||||||||| ||| | | |||||| | ||| Sbjct 1873 ATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAG--AAAAGTTCTTTTGCTGTATATG 1816 Query 363857 TCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAG 363916 | || || ||| | ||||||||||| ||| | || | | ||||| || |||| Sbjct 1815 TTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAG 1756 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG-AAG 363975 | |||||| | || |||||| | || ||||| ||||||| |||| |||||| || Sbjct 1755 AAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAA 1696 Query 363976 CGCGTGGAGGCAGGTAAGAATTGGTCACT-CTTTTGCCCACACGAATGTCCAGG 364028 | || ||| | |||||| ||| | | | ||||| ||||||||||||| Sbjct 1695 AGAGTAAAGGAAAATAAGAACTGGACTTTAATGGTGCCCTAACGAATGTCCAGG 1642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303175085359580