Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4327 111 1e-19 seq2587 89.7 4e-13 >seq4327 Length=1153 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || || Sbjct 727 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 669 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| ||| || || |||||||| || || || || Sbjct 668 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 609 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| || || || ||| | ||||||| |||| | | | | || | Sbjct 608 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAA-CATTATCTGACT 550 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||| || || | ||||| || Sbjct 549 ATAACATTCAAAAAGAGTCAACCTTACATTTGGT 516 >seq2587 Length=1884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 176/257 (68%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 133022 TCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACA-CATCAATGA 133080 ||||||||||| || || || | || || ||||| |||| ||| || ||| || | Sbjct 1612 TCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACCATTAAAGT 1671 Query 133081 CCA----TTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATGGCAA 133136 ||| || || |||| || | ||||||| || || |||| ||| || ||| Sbjct 1672 CCAGTTCTTATTTTCCTTTACT---CTTTTTCATAAATAAATCAGGTACCCAAATAGCAT 1728 Query 133137 AAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaaaaaag 133196 |||||||||| ||||| ||| ||||| || |||| | | || || ||||| Sbjct 1729 AAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATT 1788 Query 133197 taaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTT-TACCT 133255 |||||| |||| |||||| || || | |||||| || |||| | |||| ||| || Sbjct 1789 CAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACTTTTCTTTTCCTCCA 1848 Query 133256 CCCTGATCCACATGTCT 133272 || ||||| |||| ||| Sbjct 1849 CCTTGATCTACATATCT 1865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429879986056950