Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2587 219 5e-52 seq3686 187 3e-42 >seq2587 Length=1884 Score = 219 bits (242), Expect = 5e-52 Identities = 697/1068 (65%), Gaps = 42/1068 (4%) Strand=Plus/Plus Query 62225 TAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62284 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 62285 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62344 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 62345 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 62401 |||| ||||||| |||| | ||| | |||| Sbjct 952 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 1011 Query 62402 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 62458 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 1012 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 62517 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 1069 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 1127 Query 62518 TAGATCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 1128 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 1185 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 1186 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 1245 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 1246 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 1305 Query 62696 TCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCA 62749 || | | ||| ||||| ||| | ||||| ||||| || |||||| Sbjct 1306 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 1365 Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 1366 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 1425 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 62869 || |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 1426 CATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 1485 Query 62870 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC-TTTCCA 62928 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 1486 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCCA 1545 Query 62929 GACGACTCGAGCCTTTATTATAGATTTGTATCTC----TTTTCTCTTTCGTATAGTGTAT 62984 | || | || | || | ||| | || | |||||| ||||||| ||||| Sbjct 1546 TAAATCTTGTGC---AAGAATTGTTTTTTTTCCCAAGATTTTCTTCTTCGTATTTTGTAT 1602 Query 62985 ACAA-TCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA- 63042 | || | ||| || || || ||||| | | || |||||||| | || || Sbjct 1603 ATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCAC 1662 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTC-GTTTCATAAAGAGATCAGGAATCCAAA 63101 ||| || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| Sbjct 1663 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAA 1722 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 ||| ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | Sbjct 1723 TAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTA 1782 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 || | | |||||| |||||||| ||||| | |||| || | || | || Sbjct 1783 AAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAA------AAGAACTTT 1836 Query 63222 TGTT----TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACT 63265 | || ||| || ||||||| ||||| || || | |||| ||||| Sbjct 1837 TCTTTTCCTCCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq3686 Length=1345 Score = 187 bits (206), Expect = 3e-42 Identities = 378/556 (68%), Gaps = 4/556 (1%) Strand=Plus/Plus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 ||||| ||||| || || ||||||||||| ||||| || ||| || | || | Sbjct 619 AAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGT 678 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 679 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 738 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 32846 || || ||| || | || ||| || || || | | |||| |||||| || Sbjct 739 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTA 798 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 799 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 858 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | | || || ||| ||| ||| ||||||| || | |||||| |||| || || Sbjct 859 AATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 918 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || ||||||| || |||||||| | || || | | || || | || ||||||||| Sbjct 919 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCT 978 Query 33027 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | ||||| | || ||||||||||| |||||||| ||||| ||||||||||| || Sbjct 979 CTTAAAAATT-TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1037 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 33144 | |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1038 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1096 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | |||| ||| | |||||| | ||||||||||| ||||| || |||||||| | || Sbjct 1097 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1156 Query 33205 TCCAGATGTCATGATA 33220 |||| | ||| |||| Sbjct 1157 TCCATACTTCAGGATA 1172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633547330924000