Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4327 111 1e-19 >seq4327 Length=1153 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 725 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 666 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 665 TGATACAATTGAA--AATGTTAAAGCAAAAATCCAA-GATAAAGAAGGAATTCCCCCTGA 609 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || |||||||||||||||| | || | || || Sbjct 608 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTA 549 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||||||||| || || ||||||| || Sbjct 548 TAACATTCAAAAAGAGTCAACCTTACATTTGGT 516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433271544132350