Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3686 230 3e-55 seq8161 102 9e-17 seq3553 96.9 4e-15 >seq3686 Length=1345 Score = 230 bits (254), Expect = 3e-55 Identities = 583/867 (67%), Gaps = 25/867 (3%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 309 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 368 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 369 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAGCAAC 427 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 428 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 486 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 487 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 544 Query 93024 CGGCTTCTTTCA--AGATTTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAAT 93080 | |||||||| | | |||| | | || || | |||| ||| || | | ||| | Sbjct 545 CTGCTTCTTTAACTATATTTTGAACAACCT-CT-TCTGGTAATTTATTTTCCAACA-AGC 601 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 | || ||||| || ||| || || ||||| ||||| |||| ||||| ||||| | Sbjct 602 TATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTAC 661 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 | ||||||||||| |||| | |||| || | ||||||||||| | |||||| | Sbjct 662 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTC 721 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 || ||| ||||| ||||| || |||| || ||||| | ||| |||||| | | Sbjct 722 CACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAGT 778 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | |||||||| ||||| ||||| || || || |||| ||| Sbjct 779 TCGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 838 Query 93321 CGATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 | ||||| | |||| | |||||| ||| | | ||| | || || |||| ||||| Sbjct 839 CAATAGCATGAAATAAATTTAATCT--CTCTTTCTCATCCCTAATATAATTATCAATTAA 896 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | | ||| ||||||| || | ||| || | || ||||| || | || || | | Sbjct 897 TAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTT 956 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATAC 93497 ||||| | || || |||||| ||||| | ||| | | |||||| ||||| | Sbjct 957 GGCTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTC 1015 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| ||||||||||| || | | ||| |||||||||||||| |||| | || | Sbjct 1016 CATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTA 1075 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || || | || | ||| |||| | ||| | |||||| |||||||||| || | Sbjct 1076 ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGG 1135 Query 93618 CTTCTGCTTTTTTGTACATATCCCATA 93644 | || |||||||| || | || ||||| Sbjct 1136 CCTCAGCTTTTTTATAAAAATTCCATA 1162 >seq8161 Length=638 Score = 102 bits (112), Expect = 9e-17 Identities = 139/188 (74%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 496 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 437 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 436 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAAC 378 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATC-ACAA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 377 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 319 Query 92966 TTCATTCC 92973 |||||||| Sbjct 318 TTCATTCC 311 >seq3553 Length=1395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/169 (74%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 1220 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1279 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 1280 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAAC 1338 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACAT 92955 | | | | | ||||||| |||||| |||||||| ||||| |||||||| Sbjct 1339 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556786389475600