Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4327 91.5 1e-13 >seq4327 Length=1153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||||| || || |||||||||||||| || || | | || || | |||||| Sbjct 516 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 574 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| |||||| | || | | ||||| || || ||||| |||||||| || Sbjct 575 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 634 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||||| |||| | | ||||| || || | | ||| || || | || | |||| Sbjct 635 GAT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 693 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| | ||||||||||| || ||||| Sbjct 694 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420079663052280