Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4327 89.7 1e-12 >seq4327 Length=1153 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| ||||| | ||| ||||||| || || ||||||||||| | || ||||| Sbjct 528 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 587 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | || || || || |||||||||| || || || |||||| || Sbjct 588 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTTGCTTT 646 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | || || | || ||| ||||| | ||||| || || || || | || Sbjct 647 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 706 Query 199612 TTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| ||||| |||||| Sbjct 707 TTTTACAAAGATTTG---CATTTT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178760128266230