Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3686 277 7e-69 seq4327 179 1e-39 seq2587 141 4e-28 seq7187 140 1e-27 seq9906 109 2e-18 seq1134 107 8e-18 seq3140 104 9e-17 seq250 98.7 4e-15 seq5459 95.1 5e-14 seq2573 93.3 2e-13 seq5793 91.5 6e-13 seq1763 91.5 6e-13 seq696 91.5 6e-13 seq7217 87.8 7e-12 seq462 84.2 9e-11 >seq3686 Length=1345 Score = 277 bits (306), Expect = 7e-69 Identities = 605/890 (68%), Gaps = 16/890 (2%) Strand=Plus/Minus Query 496911 AATGAAGAATTATTAAAATCAGAAAATTCTCGTTATACTGTATTTCCTATTAAATATCAT 496970 |||||| || ||||||| |||| | | | ||| || |||||||| |||| | Sbjct 1226 AATGAAAAAATATTAAATAAAGAATCAAGTAGATTTACATTACATCCTATTATGTATCCT 1167 Query 496971 AAAATCTGGGATTTATATaaaaaaaTGGAAGCAGCTTTTTGGACAGCTGAAGAAATAGAT 497030 || | ||| |||| ||||||||| || || | |||||||| ||||||||||||||| Sbjct 1166 GAAGTATGGAATTTTTATAAAAAAGCTGAGGCCTCATTTTGGACTGCTGAAGAAATAGAT 1107 Query 497031 TGGTCTAAAGATAAACATGATTTTAAAAAATTAAATCAAGATGAACAACGATTTATTAAA 497090 | || | ||| | || ||| ||||||||||| | ||||| ||| ||||| ||| Sbjct 1106 TTATCAAGTGATTTGAAAGACTTTGAAAAATTAAATGTAAATGAAAAACATTTTATAAAA 1047 Query 497091 TATGTATTAGCAtttttttCGGCAAGTGATACAATTGTAAATATTAATTTAGG-AGAAAG 497149 |||| ||||||||||| | || |||||| ||| ||| ||||||| || || Sbjct 1046 CATGTGCTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTAGCTAGTAAA 987 Query 497150 ATTATCTCATGAAGTTCAACCACTTGAAGCCAAAATTGCTTATACTTTTCAAAT-GATGA 497208 || | | ||||| ||| | |||||||||||| |||| |||||||||| | || Sbjct 986 TTTTTAAGA-GAAGTACAAATAATTGAAGCCAAAAAGTTTTATGCTTTTCAAATAGCTGT 928 Query 497209 TGGAAGGGATCCATAGTGAAGTATATGCACTTCA--AATAGATAAT-ATAATAGAAGATG 497265 || || || || |||| ||| | || | ||| |||||| ||| ||| |||| Sbjct 927 TGAAAAT-ATACACTCTGAAACCTAT--AGTTTATTAATTGATAATTATATTAGG-GATG 872 Query 497266 TTCAAGAGAGAAAAGATATTTTAAATTCAATAGAAACTGTACCCTGTATTAAAGCAAAAA 497325 |||||||| | || | || || | || |||| | |||| || ||| ||| Sbjct 871 AGAAAGAGAGATTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAATAAAG 812 Query 497326 C-TGATTGGATGTTAAAATGGGTTAAATCTGAAGAAAG-TTTTGCAACAAGAATGGTGGC 497383 | | || || | |||| || ||||| | ||| |||||| |||||| || || Sbjct 811 CATTATGGGCAGCTAAAT--GGATAAATGATACGAACTCTTTTGCTGAAAGAATTGTAGC 754 Query 497384 ACAAGTAATTTCTGAAGGATTAttttttagtggaagtttttgtgctattttttGGTTaaa 497443 | | | | |||||| |||| |||||||||||||||||||| || |||||||| || Sbjct 753 TAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATATTTTGGTTTAA 694 Query 497444 aaataaaaaTATAATGCCTGGTTTAATCTCATCAAATGAATTAATTGCACGGGATGAAGG 497503 ||| |||||| | | | |||||||| | |||||||| ||| | |||||||| Sbjct 693 AAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTGATTAGTAGAGATGAAGG 634 Query 497504 AATGCATTGTGATTATAGTATTATGTTATATCACATGCTTCAAAATAAACTGTCACAAGA 497563 | | || |||| || | | | | ||| | || | |||||||| | || |||| Sbjct 633 ATTACACACAGATTTTAATTGTTTAATTTATAGCTTGTTGGAAAATAAATTACCAGAAGA 574 Query 497564 AAAAATTCAACAAATGTTTAAAGATGCAGTGGAAACAGAAAGAATATTTATTTGTGAAAG 497623 ||||| | || ||||||| ||||| ||| ||||||| ||||||||||||| Sbjct 573 GGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAAAGATCATTTATTTGTGAATC 514 Query 497624 CTTACCATGCTCCTTATTAGGAATGAATGCGGACCTAATGGAACAATACATTAAATTTGT 497683 ||||| || ||| | ||||||||| | || ||| ||||||||| ||||||| Sbjct 513 TTTACCTTGTGATTTAATTGGAATGAATTCAAGACTTATGTCTCAATACATTGAATTTGT 454 Query 497684 GGCTGACCAATTAATTATTA-AATTAGGATATAATAAAATATTTAAAGTAGATAATCCAT 497742 ||||| | ||| |||| | ||||| | ||| | || | | | ||||||| Sbjct 453 TGCTGATCGATT-ATTAGAATGTTTAGGTTGCTCCAAAGTTTTCCATTCAAAAAATCCAT 395 Query 497743 TTACATGGATGGAAGCAATTTCAATTGAAGGTAAAACTAATTTCTTTGAA 497792 ||| |||||||| ||| || | |||| ||||| |||||||||||| Sbjct 394 TTAGTTGGATGGACTTAATATCTTTACAAGGAAAAACAAATTTCTTTGAA 345 >seq4327 Length=1153 Score = 179 bits (198), Expect = 1e-39 Identities = 168/214 (79%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || |||||| | || || ||||| || ||||||||||||||| |||| Sbjct 725 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 666 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| |||||| | ||||| |||||| |||||||| ||||||||||| |||||||| Sbjct 665 TGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCA 606 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 |||| | ||||||||| | || |||||| | |||||||||||||| || | || ||||| Sbjct 605 ACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAA 546 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTA 391262 ||| | || || |||| | || || ||| || Sbjct 545 CATTCAAAAAGAGTCAACCTTACATTTGGTAATA 512 >seq2587 Length=1884 Score = 141 bits (156), Expect = 4e-28 Identities = 330/492 (67%), Gaps = 14/492 (3%) Strand=Plus/Minus Query 501051 AAAGGGTCGTTTGCTTTCTATTTAGAACCTCATCATGCGGATATATTTGATTTTTTGGAA 501110 ||| | || |||||| | ||| | ||||| ||| | ||||| ||||| ||||| || Sbjct 1837 AAAAGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGAT 1778 Query 501111 CTACGAAAAAATACTGGTGCCGAATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGG 501170 || |||||||| |||| ||| | ||||| ||||||||||||| || | ||| Sbjct 1777 TTAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGG 1718 Query 501171 GTTTCTGACTTATTTATGAATCAGGTTAAATTAAA-TAATGATTGGTATTTATTT-TGTC 501228 || |||| ||||||||||| || |||| ||| ||| | ||| |||| | || | Sbjct 1717 GTACCTGATTTATTTATGAAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGGTGCC 1658 Query 501229 CAGACAAAGCACCAGGATTAAATGATGTATATGGAGATGAATATGAAACTCTT-TATTGG 501287 | || || ||||| |||| ||| | || || |||| ||||| || ||| Sbjct 1657 CTAACGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAAATTATATACA 1598 Query 501288 AAATATGTATCAGAAGAAAAATNNNNNNNNNNNNNNAAAGCCCGGAAA----TTATGGGA 501343 ||||| | | |||||||| || | | | | ||||||| Sbjct 1597 AAATACGAA---GAAGAAAATCTTGGGAAAAAAAACAATTCTTGCACAAGATTTATGGGT 1541 Query 501344 A-GCTATAATG-ACAGCACAGTTTGAAACTGGTTCACCCtatatgttatataaagataat 501401 |||||| | | ||| || | ||||||||| ||| |||||||||||||||||| Sbjct 1540 TTGCTATATTACAAAGC-CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCA 1482 Query 501402 attaataaaaaatcaaaccagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCT 501461 |||| ||||| || || |||||| |||||| ||||| | | |||| |||| | Sbjct 1481 TGTAATTCTAAATCGAATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTAATGTTGT 1422 Query 501462 GAAATTGTAGAATATTCAGATTCTACTGAAACAGCTGCTTGTAATTTAGCTTCAATTGCT 501521 |||||| | |||||| || || |||| ||||| ||||||||||||||| ||||| Sbjct 1421 GAAATTATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCA 1362 Query 501522 CTA-CCAAATTT 501532 || ||||||| Sbjct 1361 TTATGCAAATTT 1350 Score = 127 bits (140), Expect = 8e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 501783 AAAGATTATGATTATGAAAAATTATGGAATGTTGCTTATCATGTAACTCAAAATTTAGAT 501842 ||||| | | ||| | ||||||||| || || || | | | ||| |||||||||| Sbjct 1334 AAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTTAGAT 1275 Query 501843 AGTGTAATTGATAAAAATTATTATCCTACTAAAGAATCTAGAAGAAGTAATATGAGACAT 501902 | | ||||| | |||||||||||| ||||||| | |||| |||| |||||| Sbjct 1274 AAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAATAAAAGACAT 1215 Query 501903 CGTCCTATTGGATTAGGAATACAAGGATTGGCGGATACTTTAGCACTTTTAAGAGTTCCT 501962 | ||||||||| ||||| |||||||||| || ||||| || ||||||||| ||| Sbjct 1214 AGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATATCCA 1155 Query 501963 TATGCATCCAAAGCAGCATTAGATATTAATGAAAAAATATTTGGTATAATTTATCATGCT 502022 |||| ||| ||| ||| ||| | ||| || |||||||| | || ||| ||||| Sbjct 1154 TATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTATGCT 1095 Query 502023 GCT 502025 ||| Sbjct 1094 GCT 1092 Score = 107 bits (118), Expect = 8e-18 Identities = 229/341 (67%), Gaps = 7/341 (2%) Strand=Plus/Minus Query 502332 TGGGATTCCTTAATAAATGAAATGAAAAAATATGGAACTAGAAACAGTTTGCTTACAGCA 502391 ||||||| |||| ||| |||| | ||| | ||| ||||| | | ||| |||| Sbjct 965 TGGGATTTATTAAAAAAAAAAATAAGTAAACACGGATTAAGAAATTCTCTTCTTTTAGCA 906 Query 502392 CTAATGCCAACAGCATCTACATCTCAACTATTAGGCAATTATGAATCATTTGAACCATTT 502451 | ||||||||||| || || || ||| | ||||| ||| ||||||| |||||||||| | Sbjct 905 CCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAATAATGAATCCTTTGAACCATAT 846 Query 502452 ACTTCTAATATATATACTAGAAGAACTTTAGCAGGTGAATTTATAGTTGTTAATAAACAT 502511 || ||| || ||| ||| | |||| |||||||| | ||||||||| ||| Sbjct 845 ACAAGTAACATTTATTACAGACGTGTTTTAAGTGGTGAATTCTTTGTTGTTAATCCTCAT 786 Query 502512 TTAATAAATGATTTGAATGAAATCGGTGAATGGACTAATGAAATTAGACAAAAAGTAATT 502571 || |||| ||| | ||| | ||| ||| | | || || | |||| || ||||| Sbjct 785 TTGTTAAAAGATCTTTTTGATAGAGGTCTTTGGGATGAAGATATGAAACAACAATTAATT 726 Query 502572 AATGATAATGGTTCTATTCAAAATATATT-----ACTACCTAATATAATTAAAAACATCT 502626 ||||||| | ||| |||||||| | |||||| | | ||| | | | Sbjct 725 GCCCATAATGGAAGTGTTC--AATATATTAGCGAAATACCTAGTGACTTGAAAGAGTTGT 668 Query 502627 ATCAAACTTCATATGAAATGAAACAAAAATATATAATAGAT 502667 || |||| | ||||| ||||||||| |||| || ||| Sbjct 667 ATAAAACCGTTTGGGAAATCAAACAAAAAAATATTATTGAT 627 >seq7187 Length=700 Score = 140 bits (154), Expect = 1e-27 Identities = 476/723 (66%), Gaps = 38/723 (5%) Strand=Plus/Minus Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaa 451481 |||| || || |||||| |||| ||||| ||| || |||| |||||||| || Sbjct 695 AACCCACCGCTGCTGCTTTAGCTTATGGTTTAG----ATAAAAA-----AGAAGAAACAA 645 Query 451482 aTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAG 451541 ||||||||||| ||||| || || || ||| |||| |||| | | ||||| Sbjct 644 GTATTTTAGTATACGATTTAGGAGGTGGTACTTTTGATGTTTCTATTTTAGTTATTGATA 585 Query 451542 ATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTG 451601 |||| ||||||||||| | ||||| ||| ||||||| |||||||||||||| ||| Sbjct 584 ATGGTGTATTTGAAGTCTATGCAACAGCAGGTAATACTCACTTAGGAGGTGAAGATTTTG 525 Query 451602 ATAATGCAATTGTGGAATGGTTGAAAACTGATGTTCAACGAAAACTA-AAAGTAGATATT 451660 || | | || |||| | || | || ||||| || |||| | || ||||| || Sbjct 524 ATCAAAGAGTTATGGACTATTTTATAA-AAATGTTTAAAAAAAAAAATAATATAGATCTT 466 Query 451661 TCTACTAACCAAAAAGCACTTAGACGTCTTAAAACATCAGCAGAAAAAGCTAAAATTACA 451720 | | ||| ||| || | | | || | || |||| || |||| | | Sbjct 465 AGATCAGATAAAAGAGCTATTCAAAAATTAAGAAAAGAAGTTGAAATTGC-AAAAAGAAA 407 Query 451721 C---TCAGTTCAACACAAACTACTAGTATAAACATTGATAGTTTAGTTGATGGAATGGAT 451777 | |||||| ||| | || | || | ||||| | ||||||| ||| | Sbjct 406 CTTATCAGTTGTTCACTCAACACAA--ATTGAAATTGAAGATATAGTTGAAGGACATAAC 349 Query 451778 TATGCTACTACTCTTACCCGTGCTAAATTTGAATCAATTTGTTCCAGTATTTTTGCACGG 451837 | | | || | || | || ||||||||| |||| | | |||| | | | Sbjct 348 TTTTCAGAAACATTAACAAGAGCCAAATTTGAA-GAATTAAAT-GATGATTTATTTA-GA 292 Query 451838 GTAA---TGAAACCTGTTGATCAAGTATTACATGATTCTAAA-ATTAGTAAAGATAAAAT 451893 | || | |||||||| | |||||||| ||||| | ||| || | |||| ||||| Sbjct 291 GAAACTTTAGAACCTGTTAAAAAAGTATTAGATGATGCAAAATATGAAAAAAG-CAAAAT 233 Query 451894 TGATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTC 451953 ||||||||||| | ||||||||||| || || || |||||||||||| | || | Sbjct 232 CGATGAAATTGTTTTAGTAGGAGGTTCAACTCGTATACCTAAAATTCAACAAATTATTAA 173 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTA--AATCCTGATGAAGCTGTTGCA 452011 | ||| || ||| ||| | | |||| ||| || || |||||||| || ||| Sbjct 172 AGAGTTTTTCAATGGTAAAGAACCAAAT-AGAG-GTATTAACCCAGATGAAGCCGTAGCA 115 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGAT 452071 ||||||||||| ||||||| | |||| | || || || ||| ||||| |||| Sbjct 114 TATGGTGCTGCTATTCAAGCTGGTATTAT------TTTAG--GA-GAAGAATTACAAGAT 64 Query 452072 ATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATG 452131 || | || ||||||| || || || || | || ||||||| | |||||| || ||| Sbjct 63 GTTGTATTGTTAGATGTTACTCCATTAACTTTAGGTATTGAAACTGTTGGTGGTATTATG 4 Query 452132 ACT 452134 ||| Sbjct 3 ACT 1 >seq9906 Length=546 Score = 109 bits (120), Expect = 2e-18 Identities = 175/244 (72%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 499563 TTAAATAAAATTATTGATTATAACCGTGATTATTCATT-TGAtttttttGGTATTAAAAC 499621 ||||||||| || ||||||| | |||| | ||| ||||| |||||| ||||||| Sbjct 112 TTAAATAAAGAAATAGATTATACAAGAGATT-TCAATTATGATTATTTTGGATTTAAAAC 170 Query 499622 AATGGAAAGAACCTA--TATAACAAAACTAGATGGTCACTTAATTGAAAGACCTCAAGAT 499679 | | ||||| | || ||| || | || || | | | |||||| | ||||| || Sbjct 171 ATTAGAAAGGTCTTACTTATTACGTAT-TA-ATAATAAAATTATTGAACGTCCTCAGCAT 228 Query 499680 GTGTTCATGCGAGTAGCATCTCTTG---TACATTGTGGTGATTTACAAAAAACAATAGAT 499736 | || ||| ||||| ||| | | ||||| | |||| | |||| | |||| Sbjct 229 TTATTAATGAGAGTA---TCTATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAA 285 Query 499737 TCATATAATTTAATGTCaaaaaaaTATTTTACTCATGCTAGTCCTACATTATTTAATGCA 499796 | ||| ||||||||||| ||||||||||||||||||||| |||||||||||||||| | Sbjct 286 ACTTATCATTTAATGTCACAAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCG 345 Query 499797 GGAA 499800 |||| Sbjct 346 GGAA 349 >seq1134 Length=3426 Score = 107 bits (118), Expect = 8e-18 Identities = 290/436 (67%), Gaps = 11/436 (3%) Strand=Plus/Minus Query 364551 GATACACAAAGAAGTATTCCATCTTTAGTTGATGGATTTAAACCTTCTCAAAGAAAAATT 364610 |||||| |||||||||| ||| | | | ||||||| ||||| ||||||||| || Sbjct 2750 GATACAGAAAGAAGTATACCAAATATTATGGATGGATGGAAACCAGGACAAAGAAAAGTT 2691 Query 364611 TTTTATGGA-GCAAATTTAAGAGGATTAGAAAAAGATCAAGTAAAAGTAGCTCAATTAGC 364669 || ||||| || ||||| || | | || || || || ||||| || || | | Sbjct 2690 TTATATGGTTGC---TTTAAAAGAAATTTAAGAA-ATGAATGTAAAGTCGCGCAGCTTGT 2635 Query 364670 AGGTTTTGTATCTGACCGGGTAGCTTATCATCACGGTGAGGCAAGTTTAATGGGAGCAAT 364729 |||| | | | || | || |||||||| ||||| || ||| | | || Sbjct 2634 TGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATCATCATTACAACAAACTAT 2575 Query 364730 AATTGGAATGGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGG 364789 || ||||| |||| ||||| || || ||| ||||||| |||||||| || Sbjct 2574 TATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAATTTTCTAGAACCCTGTGG 2515 Query 364790 ACAATTTGGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAGC--CCACGT-TATATTTG 364846 ||||||||| ||| || | || ||||| ||| | | ||| | | || ||||||| Sbjct 2514 ACAATTTGGTAGTAGAAAAGAAGGTGGTAAGGATGCATC-AGCAGCTAGGTATATATTT- 2457 Query 364847 GACCAAACTTGAAAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAA 364906 || ||||||| | | | || ||||||| || || ||||||||||||| Sbjct 2456 -ACAAAACTTGCATCATCTACTAGAAGTATATTTAATGAATTTGACGATCCAATTTTAAA 2398 Query 364907 TTATATTAATGATGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTAT 364966 ||| | ||||| || ||| || | ||||| ||| |||| | || ||||||||| Sbjct 2397 ATATTTAAATGAAGAAGGACAAAAAATAGAACCACAATATTATATACCAGTTATTCCTAC 2338 Query 364967 GATTTTAGTAAATGGA 364982 ||| ||||||||||| Sbjct 2337 AATTCTAGTAAATGGA 2322 >seq3140 Length=1580 Score = 104 bits (114), Expect = 9e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 412245 TTTAAAATCTTCCATTTTAATAAAAGTTATACTTACACCCTTTTTTCCAAAACGACCACT 412304 ||| | ||| || |||| | |||| | || ||||| ||| ||||||| |||||||| Sbjct 937 TTTTATATCATCATTTTTTACAAAATTAATTGCAACACCTTTTCTTCCAAATCGACCACT 878 Query 412305 TCTACCAATTCTATGTATAAAAGTTTCATGATTTTTAGGTAAATCATAATTTATAACTAA 412364 ||| ||||||||||| ||| || |||| || || |||||||||||||| | |||||| Sbjct 877 TCTTCCAATTCTATGAATATAACTTTCTCGAGAGTTTGGTAAATCATAATTAACAACTAA 818 Query 412365 TTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTGTTAATAAAATTCGTGT 412424 | || ||| | | ||| | || | | ||| |||||||| || ||||| || Sbjct 817 TGAGACTTCATGTACATCCAATCCTCTACCCCATATATCAGTTGATATTAAAACTCTATA 758 Query 412425 TTTTCCCTCTCTAAATT 412441 ||| | | |||||||| Sbjct 757 TTTGCATTGTCTAAATT 741 >seq250 Length=6435 Score = 98.7 bits (108), Expect = 4e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 420723 TCTTCTTCCAGCTCGTCCTGCCATTTGAAGAAATTCATCAGTTCGTAAGAATCTTCTACC 420782 ||||||||| |||| || | |||||| | |||| || | ||| | |||| | Sbjct 446 TCTTCTTCCTGCTCTACCGGACATTTGTGTATATTCGGAAGATGTTAATATTCTTTTTTT 505 Query 420783 ACAATCATCATATTTAGATAATCCAGTAAATACAACAGTTTTTGTAGGCATATTTACACC 420842 ||| ||||| |||| | | |||||| | || | || | |||||||| | || Sbjct 506 TAAATGATCATGTTTATAAATAGAAGTAAAAATGACGGACTTAGCTGGCATATTAATTCC 565 Query 420843 AACAGAAAAAGTTTCAGTTGCTAACAAAACTTTAATTAAtttttttGAATAAAGAATTTC 420902 | || ||| |||||||| || || || ||||| ||||| ||||||| | | |||||| Sbjct 566 CATAGCAAATGTTTCAGTCGCAAATAATACTTTTATTAAACCTTTTGAAAATAAAATTTC 625 Query 420903 AACAATTTCTTTTAAAATAGGAATTATACCAGAATGATG 420941 ||||||||||||||| || || | | |||| |||||| Sbjct 626 AACAATTTCTTTTAATATTGGTAACAAACCACTATGATG 664 Score = 89.7 bits (98), Expect = 2e-12 Identities = 206/305 (68%), Gaps = 9/305 (3%) Strand=Plus/Plus Query 421560 ATATAATGAATTTCTAAAAATTTCAGCAGTCATAATAACTAGACTAGCACCAGGATTAAC 421619 ||| | | ||||||| || ||||| | ||||||||| | | | ||| | ||| | Sbjct 1496 ATAAAGTAAATTTCTTAATATTTCTGTAGTCATAATTGACA-ATTTGCATTAACATTCAT 1554 Query 421620 TTTATTATCTCCAGTCATAATTCCAATATCTG---ATATTTCTTCAGAAAAATCTTTATA 421676 ||| ||| || || || ||||||| || | |||| | || | || || | ||| Sbjct 1555 TTTTACATCACCTGTTATTATTCCAACATTTTTAAATATATTTTTA---AATTCATAATA 1611 Query 421677 TTTTTGATTGGATAAAGCTTTAATTGGACTAATATAAACTACCTTTTTATTTTCACTCAT 421736 ||||||||| ||||||||| || || || |||||| | ||||||||||| | || Sbjct 1612 TTTTTGATTACTTAAAGCTTTTATAGGGCTTGTATAAATTGCCTTTTTATTTAATTTTAT 1671 Query 421737 TGCTTTTGCTATGGCATATTCAGCAGGTACAGTTTTACCACTTCCTGTTGCTACTGCCAC 421796 || | |||||| |||| ||| || || |||||||| | ||| | |||| | Sbjct 1672 TGATAATGCTATAGCATGTTCTGCTATTAATGTTTTACCTGCTGATGTATGTGCTGCAAT 1731 Query 421797 AAATACATTTTCATTATTATCTATA-CCTTCACATGCATACTTTTGAAAATGGTCTAATT 421855 |||||||| | | ||||| |||| || ||| || |||||||| | || | || Sbjct 1732 AAATACATGCTTAAAATTATTTATATGTTTTACA-GCTCTTTTTTGAAAGTTATCAAGTT 1790 Query 421856 CAAAA 421860 ||||| Sbjct 1791 CAAAA 1795 >seq5459 Length=938 Score = 95.1 bits (104), Expect = 5e-14 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 248782 AAAGCTAGAATTTTCATTGGTCCTATGTTTTATTTGAGACTTAAACATATGGTACTTGAT 248841 ||| ||| ||| || || || || | |||||| ||| | ||||||||||| ||| Sbjct 21 AAATCTAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGAT 80 Query 248842 AAAGTTCATTCCAGAAGTATGGGTCCTAGACAAGCT---ATTACTAGACAACCCATGGAA 248898 ||| | ||| ||||||||| || ||| | | || ||||| |||||||| | ||| Sbjct 81 AAAATACATGCCAGAAGTAGAGGACCT---CTAACTATGATTACAAGACAACCAACAGAA 137 Query 248899 GGACGTTCTAAAGATGGAGGTCTTAAAATTGGAGAGATGGAAAAAGATGCAATGGTTGCT 248958 ||| | || | |||||| ||| | | | ||||||| ||||||| |||| ||| | || Sbjct 138 GGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCT 197 Query 248959 CATGGAATAGGACAATTCTTAAAAGAACG 248987 |||||| | || | ||||| ||||| Sbjct 198 CATGGATCTGCTAAAATGTTAAAGGAACG 226 >seq2573 Length=1892 Score = 93.3 bits (102), Expect = 2e-13 Identities = 158/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 412266 AAAAGTTATACTTACACCCTTTTTTCCAAAACGACCACTTCTACCAATTCTATGTATAAA 412325 |||||| | | || ||| ||| | ||||| | ||| ||| || | ||| |||| | | Sbjct 858 AAAAGTAACAGCTAAACCTTTTGTACCAAATCTTCCAGCTCTTCCGACTCTGTGTAAATA 799 Query 412326 AGTTTCATGATTTTTAGGTAAATCATAATTTATAACTA-ATTTAACCTCAGGAATATCTA 412384 || || ||||| || | ||||||||| ||||| | ||||| || |||||| | Sbjct 798 AGAATCTGAATTTTCTGGCATATCATAATTAATAACGATATTTATTCTTTC-AATATCAA 740 Query 412385 TCCCCCGTGCTAATAAATCAGTTGTTAATAAAATTCGTGTTTTTCC-CTCTCTAAATTCA 412443 | || | | | ||||||||||| | || ||| |||| |||||| || | |||||| | Sbjct 739 TACCTCTTCCAAATAAATCAGTGGATACTAATATTC-TGTTTTCAAACTTTTTAAATTTA 681 Query 412444 TCTACAATTTTACTTCTTTCTTCTTGTTCTAAACCTCCATGAAT 412487 || ||| | ||||||||||||| | |||||| ||||| || Sbjct 680 TCATATCTTTCAATTCTTTCTTCTTGATTTAAACCACCATGTAT 637 >seq5793 Length=889 Score = 91.5 bits (100), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 412304 TTCTACCAATTCTATGTATAAAAGTTTCATGATTT--TTAGGTAAATCATAATTTATAAC 412361 ||||||||||||| || | | || |||| |||| ||||| ||||||||||| || || Sbjct 436 TTCTACCAATTCTGTGAACATAATCTTCA--ATTTGATTAGGAAAATCATAATTAATTAC 379 Query 412362 TAATTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTGTTAATAAAATTCG 412421 ||||| || || |||||| | || | || | | |||||||| || ||||||| | Sbjct 378 AAATTTTACATCTTTAATATCAAGACCTCTTGATGCAACATCAGTTGCTATTAAAATTGG 319 Query 412422 TGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTTCTTTCTTCTTGTTCTAAACCTCC 412481 ||||||| | |||| |||| || || |||||||| ||||| | | | |||| Sbjct 318 GCTTTTTCCTGTTTTAAAATCATTTAAAACCCATCTTCTTTCATCTTGCTTTTTATCTCC 259 Query 412482 ATGAAT 412487 ||| || Sbjct 258 ATGGAT 253 >seq1763 Length=2576 Score = 91.5 bits (100), Expect = 6e-13 Identities = 195/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 421572 TCTAAAAATTTCAGCAGTCATAATAACTAGACTAGCACCAGGATTAACTTTAT-TATCTC 421630 ||| | |||||| | ||||||| | || | || | ||||| | || || |||| | Sbjct 2161 TCTCAGAATTTCTGTTGTCATAACTATTATAGATGCTTCTGGATTTA-TTGATATATCAC 2103 Query 421631 CAGTCATAATTCCAATATCTGATATTTCTTCAGAAAAATCTTTATATTTTTGATTGGATA 421690 | || || | ||| | |||| | ||||||| |||||| ||||||||||||| || Sbjct 2102 CTGTAATTAATCCTACATCTTTAAATTCTTCACTCAAATCTCTATATTTTTGATTACTTA 2043 Query 421691 AAGCTTTAATTGGACTAATATAAACTACCTTTTTATTTTCACTCATTGCTTTTGCTATGG 421750 | ||||| || ||||| |||||| ||| ||| || || |||| | || |||||| | Sbjct 2042 ATGCTTTTATAGGACTTGTATAAATTACTCTTTGCTTATCTCTCAATCCTAATGCTATTG 1983 Query 421751 CATATTCAGCAGGTACAGTTTTACCACTTCCTGTTGCTACTGCCACAAATACATTTTCAT 421810 ||||||| || || ||||| ||| ||| | | || || ||| |||||| Sbjct 1982 CATATTCTGCTATAACGGTTTTCCCAGCAGATGTATGAGCAGATACTAAAACACTTTCAT 1923 Query 421811 TATTATCTATACCTTCACATGCATACTTTTGAAAATGGTCTAATTCAAA 421859 | | |||| | ||| || | ||||||||| ||||| ||||| Sbjct 1922 TTCTTTCTAAGCATTCTATTGATTTTTTTTGAAAAGTATCTAACTCAAA 1874 >seq696 Length=4344 Score = 91.5 bits (100), Expect = 6e-13 Identities = 133/186 (72%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 412304 TTCTACCAATTCTATGTATAAAAGTTTCATGATTT--TTAGGTAAATCATAATTTATAAC 412361 ||||||||||||| || | | || |||| |||| ||||| ||||||||||| || || Sbjct 1757 TTCTACCAATTCTGTGAACATAATCTTCA--ATTTGATTAGGAAAATCATAATTAATTAC 1700 Query 412362 TAATTTAACCTCAGGAATATCTATCCCCCGTGCTAATAAATCAGTTGTTAATAAAATTCG 412421 ||||| || || |||||| | || | || | | |||||||| || ||||||| | Sbjct 1699 AAATTTTACATCTTTAATATCAAGACCTCTTGATGCAACATCAGTTGCTATTAAAATTGG 1640 Query 412422 TGTTTTTCCCTCTCTAAATTCATCTACAATTTTACTTCTTTCTTCTTGTTCTAAACCTCC 412481 ||||||| | |||| |||| || || |||||||| ||||| | | | |||| Sbjct 1639 GCTTTTTCCTGTTTTAAAATCATTTAAAACCCATCTTCTTTCATCTTGCTTTTTATCTCC 1580 Query 412482 ATGAAT 412487 ||| || Sbjct 1579 ATGGAT 1574 >seq7217 Length=697 Score = 87.8 bits (96), Expect = 7e-12 Identities = 154/222 (69%), Gaps = 12/222 (5%) Strand=Plus/Minus Query 421560 ATATAATGAATTTCTAAAAATTTCAGCAGTCATAATAACTAGACTA---GCACCAGGATT 421616 ||| | | ||||||| || ||||| | ||||||||| ||||| | ||| | ||| Sbjct 233 ATAAAGTAAATTTCTTAATATTTCTGTAGTCATAAT---TAGACAATTTGCATTAACATT 177 Query 421617 AACTTTATTATCTCCAGTCATAATTCCAATATCTG---ATATTTCTTCAGAAAAATCTTT 421673 | ||| ||| || || || ||||||| || | |||| | || | || || | Sbjct 176 CATTTTTACATCACCTGTTATTATTCCAACATTTTTAAATATATTTTTA---AATTCATA 120 Query 421674 ATATTTTTGATTGGATAAAGCTTTAATTGGACTAATATAAACTACCTTTTTATTTTCACT 421733 |||||||||||| ||||||||| || || || |||||| | ||||||||||| | Sbjct 119 ATATTTTTGATTACTTAAAGCTTTTATAGGGCTTGTATAAATTGCCTTTTTATTTAATTT 60 Query 421734 CATTGCTTTTGCTATGGCATATTCAGCAGGTACAGTTTTACC 421775 |||| | |||||| |||| ||| || || |||||||| Sbjct 59 TATTGATAATGCTATAGCATGTTCTGCTATTAATGTTTTACC 18 >seq462 Length=5118 Score = 84.2 bits (92), Expect = 9e-11 Identities = 142/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 215472 AAAATAATTATTTTAGATGAAGTTGATACTCTTACAACTGATTCACAATATGCTTTAAGA 215531 ||| || || |||||||||||| |||| | ||| ||| | |||| ||||||||| Sbjct 3531 AAATTAGTTGTTTTAGATGAAGCAGATATGATGACAGAGGATGCTCAATCAGCTTTAAGA 3472 Query 215532 CGAATCATGGAAAATTCATCATCAAA---TACAAGATTTTGTTTAATTTGTAATTACCCT 215588 ||||| || |||| || ||||| |||||||||| ||||| |||||||| | Sbjct 3471 CGAATAATAGAAA---TATATTCAAATGTTACAAGATTTATATTAATATGTAATTATATT 3415 Query 215589 AATAAATTAATTGAACCTATTATTTCTAGATGTGCACAATTTAGATTTAAACCAATTCCT 215648 ||||| || || |||||| | ||| ||| || | ||||||| || ||| ||| Sbjct 3414 CATAAAATATCAGACCCTATTTATAGTAGGTGTTCATGTTATAGATTTCAAGGAATACCT 3355 Query 215649 ACTAAA-ATTATGGAAGAAAAA 215669 ||||| || | |||||||| Sbjct 3354 -CTAAATATAAAAAAAGAAAAA 3334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975447794494520