Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020
04-12-09] 10,690 sequences; 16,893,362 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq7187 199 3e-45
seq2525 118 8e-21
seq3125 109 4e-18
seq304 107 1e-17
seq1621 105 5e-17
seq9906 104 2e-16
seq651 98.7 8e-15
seq154 95.1 9e-14
seq4058 91.5 1e-12
>seq7187
Length=700
Score = 199 bits (220), Expect = 3e-45
Identities = 483/717 (67%), Gaps = 31/717 (4%)
Strand=Plus/Plus
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
|||||||||||||| | ||||| | ||| | || | ||||| ||||| | | |||
Sbjct 2 GTCATAATACCACCAACAGTTTCAATACCTAAAGTTAATGGAGTAACATCTAACAATACA 61
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || ||| | || ||| || | || |||| | ||||||||||||||||||
Sbjct 62 ACATCTTGTAATTCTTCT---------CCTAAAATAATACCAGCTTGAATAGCAGCACCA 112
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675
||||| || |||||||| || |||| | | |||| ||| ||||||||||||||| | |
Sbjct 113 TATGCTACGGCTTCATCTGGGTTAATACCTCTATTTGGTTCTTTACCATTGAAAAACTCT 172
Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735
|| || |||| | ||||| ||||||| ||| ||||| ||||| |||||||||| |
Sbjct 173 TTAATAATTTGTTGAATTTTAGGTATACGAGTTGAACCTCCTACTAAAACAATTTCAT-C 231
Query 517736 ACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794
| || ||| | || ||||| ||| ||| ||||||| ||| ||||| | | |
Sbjct 232 GATTTTGCTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACAGGTTCTAAAGTTTC 291
Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854
|||||| || || | | |||||| ||||| ||||| || | || | | | |
Sbjct 292 TCTAAATAAATCATCATTTAATTCTTCAAATTTGGCTCTTGTTAATGTTTCTGAAAAGTT 351
Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAA--GATAGTGC 517911
| |||||| | | | |||| |||||| | || |||||| ||| || ||||
Sbjct 352 ATGTCCTTCAACTATATCTTCAATTTCAAT--TTGTGTTGAGT-GAACAACTGATAAGTT 408
Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT-TC 517969
| ||| ||| |||| | || | |||| | || | | ||| || | || |||| |
Sbjct 409 TCTTTTTGCAATTTCAACTTCTTTTCTTAATTTTTGAATAGCTCTT--TTATCTGATCTA 466
Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT--AT 518027
| |||| | |||| |||| | || || || | | | || | || || || ||
Sbjct 467 AGATCTATATTATTTTTTTTTTTAAACATTTTTATAAA--ATAGTCCATAACTCTTTGAT 524
Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087
|||||||||||||||| || | |||||| |||| || || |||| || | ||||
Sbjct 525 CAAAATCTTCACCTCCTAAGTGAGTATTACCTGCTGTTGCATAGACTTCAAATACACCAT 584
Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147
|||| | |||| || |||||| || ||||| || | ||| ||| | ||
Sbjct 585 TATCAATAACTAAAATAGAAACATCAAAAGTACCACCTCCTAAATC--GTATACTAAAAT 642
Query 518148 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204
| || || |||| |||||||| | |||||| || ||||||||||| || ||||
Sbjct 643 --ACTTGTT--TCTTCTTTTTTATCTAAACCATAAGCTAAAGCAGCAGCGGTGGGTT 695
>seq2525
Length=1925
Score = 118 bits (130), Expect = 8e-21
Identities = 252/370 (68%), Gaps = 6/370 (2%)
Strand=Plus/Plus
Query 517094 TAAT-TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTC 517152
|||| ||||| ||||||||| |||||| | |||||| | | |||| ||||
Sbjct 1551 TAATGTTTCTGCTTCATTTTTTGAATCAGTTAAATTTTTTTTATGTTGATCTTTTTCTCT 1610
Query 517153 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT 517212
| | || |||||| || |||| | || |||| |||| | || | || | | |
Sbjct 1611 ATTTAATTCGGCTTCTTGAACCATTTTTTCGATTTCTTCTTTACTCAAACCACCACTACT 1670
Query 517213 ATTAGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAA 517271
|| | ||||| || || ||| ||| ||||| |||||| || | | |||||
Sbjct 1671 -TTGG--ATAGTTAT-TTGTTGTTTTTTATTTGTCATTTTATCGATAGCTGAAATATTAA 1726
Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331
||| |||| ||||| | ||||||||||||||||||||| || || ||||| | || |
Sbjct 1727 TAATTGCATTTGCATCTACATCAAATGTGACTTCAATTTGTGGAACACCTCTTGGGGCTG 1786
Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391
|||| || || |||||| ||||| || || | ||||| || | | || || ||
Sbjct 1787 GTGGTATACCAACCAAATCAAATGAACCTAGCATTTTATTGTCACAGGCCATTTCTCTTT 1846
Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451
| || | || | || |||| | ||| |||||||||||||| ||||| |||||||
Sbjct 1847 CTCCTTGAAATACTTTGATACTGACTTGAGTTTGATTATCTGCTGCAGTTGAAAATACTT 1906
Query 517452 TGGAtttttt 517461
||||||||
Sbjct 1907 GAGATTTTTT 1916
>seq3125
Length=1586
Score = 109 bits (120), Expect = 4e-18
Identities = 160/226 (71%), Gaps = 8/226 (4%)
Strand=Plus/Minus
Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548
|||| ||| | ||||| || | || || ||||||| | ||| | ||||| | |
Sbjct 1464 TCATCAAATTTCCTACCTATAAGTCTCTTAACATCAAATACAGTTTGAGTTGGGTGTAAA 1405
Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT----AAATGAAAC 518604
| ||||| |||| ||||| || |||| | | || |||| | |||||| ||
Sbjct 1404 GTAGCTTCTAATTTAGCTGCTTCACCAAC----TTTCCTTTCTCCATCAACAAATGATAC 1349
Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664
|||||||||||| | || |||||| |||||| | ||||||||| | |||||||
Sbjct 1348 ATATGATGGAGTAATACGGTTACCTAAATCATTGTTTAATATTTCAACTCTTCCATTTTT 1289
Query 518665 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710
||||||| |||||||| |||| || |||||||| |||||||||
Sbjct 1288 AAATACACCAACACAACTGTAAGTAGTACCTAAATCGATACCAATA 1243
>seq304
Length=6038
Score = 107 bits (118), Expect = 1e-17
Identities = 126/168 (75%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 870793 GAAAAT-TATTG-TCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACAT 870850
|||||| ||||| | |||| |||||| ||||||||||| |||||||||||| |||| |||
Sbjct 1586 GAAAATGTATTGATTGATTTTTCTTCACCAAATATTGCAAAAGAAATGCATGTTGGTCAT 1527
Query 870851 TTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGAT 870910
||||||||||| || | || || |||||| | ||||| ||| | | | |
Sbjct 1526 TTAAGATCAACCATATTAGGAGATACTATTTCCAAAGTATTTGAATTTTTAAAAGTAAAA 1467
Query 870911 GTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATG 870958
|| | | |||||||| |||||||||||||| ||||| ||||||
Sbjct 1466 ACACATAGAGTCAATCATGTTGGTGATTGGGGAACACAATTTGGTATG 1419
>seq1621
Length=2725
Score = 105 bits (116), Expect = 5e-17
Identities = 215/314 (68%), Gaps = 4/314 (1%)
Strand=Plus/Minus
Query 671533 TGTTGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 671592
||| |||||||||||||||| | | |||| ||| |||| || | ||| || |||
Sbjct 1931 TGTGGAAGGAAAAAGAATTCCATTTGGATTTAATCATAGATCATTACCACATTTTATTAA 1872
Query 671593 ATTCGATGACAGTGCATTTTCCAGAGGTTTT-TGTCGAAATTCTTTTATTGAGGGTCTTG 671651
||| || | | || ||||| ||| |||| |||||||| | || || | ||
Sbjct 1871 ATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGTC-AAATTCTTAT-TTAAGTGGATTA 1814
Query 671652 GA-CCTTTTGAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCT 671710
|| ||| | || || || | |||| |||| | |||||||||||| |||| |||
Sbjct 1813 ACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGGTAGAGAAGGTATTATTGATACTGCT 1754
Query 671711 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATC 671770
|||||| | || ||||||||||| ||||||| | | ||||| | |||||| |
Sbjct 1753 TGTAAAACATCAGAAACTGGTTATATACAAAGAAGATTAATTAAAGCTATGGAAGATGTT 1694
Query 671771 AAACAAGAATATGATGGTACAGTAAGAAATGCAAATGGTAAACTTATATCATGTGTTTAT 671830
| | | |||||| | |||||||||||| || ||||| | |||| || | | |||
Sbjct 1693 ATGGTACAGTATGATAGAACAGTAAGAAATTCATATGGTGATATTATTCAATTTTTATAT 1634
Query 671831 GGTGATAATGGTAT 671844
||||| |||| ||
Sbjct 1633 GGTGAAGATGGAAT 1620
>seq9906
Length=546
Score = 104 bits (114), Expect = 2e-16
Identities = 148/206 (72%), Gaps = 8/206 (4%)
Strand=Plus/Plus
Query 398879 TTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAA-GAATCAACaaaaaaaTTGTTG 398937
||| ||||| | || |||||| ||||| |||| | | || || || |||||| |||
Sbjct 156 TTTTGGATTTAAAACATTAGAAAGGTCTTA-CTTATTACGTATTAATAATAAAATTATTG 214
Query 398938 AACGTCCTCAACACTTATTTATGAGAGTAGCTATTACACTCCATTACAGGAAAAATGATC 398997
|||||||||| || ||||| ||||||||| |||| | | ||| | | ||||||
Sbjct 215 AACGTCCTCAGCATTTATTAATGAGAGTATCTATAGGAATACAT------ATAGATGATC 268
Query 398998 TCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGGATATTTTACTCACGCAACAC 399057
| || | | || ||||||||| | | | || || |||||||||||| || || |
Sbjct 269 TTGAAAAGGCTTTAGAAACTTATCATTTAATGTCACAAAAATATTTTACTCATGCTACTC 328
Query 399058 CTACATTATTTAATGCTGGTACAACA 399083
|||||||||||||| | || ||| ||
Sbjct 329 CTACATTATTTAATTCGGGAACACCA 354
>seq651
Length=4451
Score = 98.7 bits (108), Expect = 8e-15
Identities = 304/462 (66%), Gaps = 24/462 (5%)
Strand=Plus/Plus
Query 626931 CATTA-ATGATGTAATCAAAACA-ATTGAGACTTATGATATTACAACTATTAGAGCATCA 626988
||||| ||||||| || | | || ||||| || |||||||| ||||||||| | |||||
Sbjct 3226 CATTACATGATGTTAT-ATACCACATTGAAACATATGATATAACAACTATTCGTGCATCT 3284
Query 626989 ACACCTCAATTCATTATGGCTAAATACATTCAAGAAAATACTGATATTAGAGTATTATTG 627048
|||||| | ||| | | | | || | ||| || | ||||| | | | ||
Sbjct 3285 ACACCTATGTATATTCTTTCAAGGTTAAT---AAAAAGTAGTTGTATTAAAATGGTTTTA 3341
Query 627049 TCAGGTGAAGGTTCTGATGAAATTCATGGCAGTTATAAATA----CATGAGATCAGCGCC 627104
|||||||| || |||||||| |||| | ||| ||| ||| | ||| ||
Sbjct 3342 AGTGGTGAAGGATCCGATGAAATATTTGGCGGATATTTATATTTTCATAA----AGCACC 3397
Query 627105 AAACAGTCAAGAATTTCATAAAGAA--ACTATTAGACTTTTGGAAGAACTTTATCTTTTT 627162
||| |||| ||||| | |||| || | ||| | | || || || ||| |
Sbjct 3398 AAATGCCGAAGAGTTTCACAGAGAATTACAA--AGAAAAATACATGATCTACATATTTAT 3455
Query 627163 GATAACAAAAGAACTGATAGA---ACAATGGCAGGAAACGGTTTAGAAGTACGTGTACCA 627219
||| | | || | ||| | || ||||| ||| |||||| ||||||||||
Sbjct 3456 GATGTCTTACGAGCAAATAAATCTACTATGGCTTTT---GGTATAGAAGCACGTGTACCA 3512
Query 627220 TTTCTTGATTTTAATTATGTCGATTTTATTATGAATATTGATCCCAATTTATTGATGTAT 627279
||| | ||||| | | | | ||||| |||||||||| ||||| || | ||||| |
Sbjct 3513 TTTTTAGATTTAGAATTTTTAGATTTAGTTATGAATATAGATCCAAAAGAAAAGATGTGT 3572
Query 627280 AAATCTGATTATATTGAAAAGAAAATTATTAGAGATGCTTTCAAAGGCTATTTGCCCGAA 627339
| || | |||||||| | ||| | ||| ||||| |||||||| || ||
Sbjct 3573 TCGAATAATAAAATTGAAAAAGATATTTTAAGAAGAGCTTTTGCTGGCTATTTACCTGAT 3632
Query 627340 AATATTCTTTACAGACCAAAAGAAGCTTTTTCTGATGCTGTT 627381
| ||||||||||||| ||| ||| ||||| |||| ||||
Sbjct 3633 CACATTCTTTACAGACAAAAGGAACAATTTTCGGATGGTGTT 3674
>seq154
Length=7595
Score = 95.1 bits (104), Expect = 9e-14
Identities = 89/111 (80%), Gaps = 2/111 (2%)
Strand=Plus/Minus
Query 200572 ATTCATTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATC-AATACTA 200630
||||||||| |||||| |||||| | ||||||| || ||| ||||||||| |||||
Sbjct 6203 ATTCATTATCATGATGTGGAAATCTTAAATCGACACCTCCACTATGAATATCTAATACC- 6145
Query 200631 TTTCCTAATGTTTTCTTGATCATGGCTGAACATTCAATATGCCAACCAGGT 200681
||||||||| | || | ||| | ||||||||||||||||||||| |||
Sbjct 6144 TTTCCTAATATGTTACTAGCCATAGTTGAACATTCAATATGCCAACCTGGT 6094
>seq4058
Length=1225
Score = 91.5 bits (100), Expect = 1e-12
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 634451 AATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATATGGGTACCATCA 634510
||| |||| || ||||| |||| || ||||||||| ||||||| ||||| |||
Sbjct 1218 AATGATGGAGAAGGTATACCAGTAGATATACATAAAGAAATGAATATATATGTACC-TCA 1160
Query 634511 -ATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAGGAAAAAACTGT 634569
||||||||||| ||| | ||||| ||| |||||| ||| | || || | ||
Sbjct 1159 TATGATTTTTGGTGAATTATTAACATCTGATAATTATGATGATGCTGAAGACAGAATAAC 1100
Query 634570 TGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTTATTCTGTTGAATTTACTAT 634629
||||||| ||||||||| || ||||| || | ||||||| | | ||||||||| |
Sbjct 1099 AGGTGGTAGAAATGGTTTCGGAGCTAAACTAACAAATATTTTTAGTAAAGAATTTACTGT 1040
Query 634630 TGAA 634633
| ||
Sbjct 1039 TCAA 1036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780291926987140
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