Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq7187 199 3e-45 seq2525 118 8e-21 seq3125 109 4e-18 seq304 107 1e-17 seq1621 105 5e-17 seq9906 104 2e-16 seq651 98.7 8e-15 seq154 95.1 9e-14 seq4058 91.5 1e-12 >seq7187 Length=700 Score = 199 bits (220), Expect = 3e-45 Identities = 483/717 (67%), Gaps = 31/717 (4%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 |||||||||||||| | ||||| | ||| | || | ||||| ||||| | | ||| Sbjct 2 GTCATAATACCACCAACAGTTTCAATACCTAAAGTTAATGGAGTAACATCTAACAATACA 61 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | || ||| || | || |||| | |||||||||||||||||| Sbjct 62 ACATCTTGTAATTCTTCT---------CCTAAAATAATACCAGCTTGAATAGCAGCACCA 112 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||| || |||||||| || |||| | | |||| ||| ||||||||||||||| | | Sbjct 113 TATGCTACGGCTTCATCTGGGTTAATACCTCTATTTGGTTCTTTACCATTGAAAAACTCT 172 Query 517676 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 517735 || || |||| | ||||| ||||||| ||| ||||| ||||| |||||||||| | Sbjct 173 TTAATAATTTGTTGAATTTTAGGTATACGAGTTGAACCTCCTACTAAAACAATTTCAT-C 231 Query 517736 ACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | || ||| | || ||||| ||| ||| ||||||| ||| ||||| | | | Sbjct 232 GATTTTGCTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACAGGTTCTAAAGTTTC 291 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 |||||| || || | | |||||| ||||| ||||| || | || | | | | Sbjct 292 TCTAAATAAATCATCATTTAATTCTTCAAATTTGGCTCTTGTTAATGTTTCTGAAAAGTT 351 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAA--GATAGTGC 517911 | |||||| | | | |||| |||||| | || |||||| ||| || |||| Sbjct 352 ATGTCCTTCAACTATATCTTCAATTTCAAT--TTGTGTTGAGT-GAACAACTGATAAGTT 408 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT-TC 517969 | ||| ||| |||| | || | |||| | || | | ||| || | || |||| | Sbjct 409 TCTTTTTGCAATTTCAACTTCTTTTCTTAATTTTTGAATAGCTCTT--TTATCTGATCTA 466 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT--AT 518027 | |||| | |||| |||| | || || || | | | || | || || || || Sbjct 467 AGATCTATATTATTTTTTTTTTTAAACATTTTTATAAA--ATAGTCCATAACTCTTTGAT 524 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||||||||||||||| || | |||||| |||| || || |||| || | |||| Sbjct 525 CAAAATCTTCACCTCCTAAGTGAGTATTACCTGCTGTTGCATAGACTTCAAATACACCAT 584 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 |||| | |||| || |||||| || ||||| || | ||| ||| | || Sbjct 585 TATCAATAACTAAAATAGAAACATCAAAAGTACCACCTCCTAAATC--GTATACTAAAAT 642 Query 518148 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 518204 | || || |||| |||||||| | |||||| || ||||||||||| || |||| Sbjct 643 --ACTTGTT--TCTTCTTTTTTATCTAAACCATAAGCTAAAGCAGCAGCGGTGGGTT 695 >seq2525 Length=1925 Score = 118 bits (130), Expect = 8e-21 Identities = 252/370 (68%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 517094 TAAT-TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTC 517152 |||| ||||| ||||||||| |||||| | |||||| | | |||| |||| Sbjct 1551 TAATGTTTCTGCTTCATTTTTTGAATCAGTTAAATTTTTTTTATGTTGATCTTTTTCTCT 1610 Query 517153 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT 517212 | | || |||||| || |||| | || |||| |||| | || | || | | | Sbjct 1611 ATTTAATTCGGCTTCTTGAACCATTTTTTCGATTTCTTCTTTACTCAAACCACCACTACT 1670 Query 517213 ATTAGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAA 517271 || | ||||| || || ||| ||| ||||| |||||| || | | ||||| Sbjct 1671 -TTGG--ATAGTTAT-TTGTTGTTTTTTATTTGTCATTTTATCGATAGCTGAAATATTAA 1726 Query 517272 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 517331 ||| |||| ||||| | ||||||||||||||||||||| || || ||||| | || | Sbjct 1727 TAATTGCATTTGCATCTACATCAAATGTGACTTCAATTTGTGGAACACCTCTTGGGGCTG 1786 Query 517332 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 517391 |||| || || |||||| ||||| || || | ||||| || | | || || || Sbjct 1787 GTGGTATACCAACCAAATCAAATGAACCTAGCATTTTATTGTCACAGGCCATTTCTCTTT 1846 Query 517392 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 517451 | || | || | || |||| | ||| |||||||||||||| ||||| ||||||| Sbjct 1847 CTCCTTGAAATACTTTGATACTGACTTGAGTTTGATTATCTGCTGCAGTTGAAAATACTT 1906 Query 517452 TGGAtttttt 517461 |||||||| Sbjct 1907 GAGATTTTTT 1916 >seq3125 Length=1586 Score = 109 bits (120), Expect = 4e-18 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548 |||| ||| | ||||| || | || || ||||||| | ||| | ||||| | | Sbjct 1464 TCATCAAATTTCCTACCTATAAGTCTCTTAACATCAAATACAGTTTGAGTTGGGTGTAAA 1405 Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT----AAATGAAAC 518604 | ||||| |||| ||||| || |||| | | || |||| | |||||| || Sbjct 1404 GTAGCTTCTAATTTAGCTGCTTCACCAAC----TTTCCTTTCTCCATCAACAAATGATAC 1349 Query 518605 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 518664 |||||||||||| | || |||||| |||||| | ||||||||| | ||||||| Sbjct 1348 ATATGATGGAGTAATACGGTTACCTAAATCATTGTTTAATATTTCAACTCTTCCATTTTT 1289 Query 518665 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 518710 ||||||| |||||||| |||| || |||||||| ||||||||| Sbjct 1288 AAATACACCAACACAACTGTAAGTAGTACCTAAATCGATACCAATA 1243 >seq304 Length=6038 Score = 107 bits (118), Expect = 1e-17 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 870793 GAAAAT-TATTG-TCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACAT 870850 |||||| ||||| | |||| |||||| ||||||||||| |||||||||||| |||| ||| Sbjct 1586 GAAAATGTATTGATTGATTTTTCTTCACCAAATATTGCAAAAGAAATGCATGTTGGTCAT 1527 Query 870851 TTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGAT 870910 ||||||||||| || | || || |||||| | ||||| ||| | | | | Sbjct 1526 TTAAGATCAACCATATTAGGAGATACTATTTCCAAAGTATTTGAATTTTTAAAAGTAAAA 1467 Query 870911 GTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATG 870958 || | | |||||||| |||||||||||||| ||||| |||||| Sbjct 1466 ACACATAGAGTCAATCATGTTGGTGATTGGGGAACACAATTTGGTATG 1419 >seq1621 Length=2725 Score = 105 bits (116), Expect = 5e-17 Identities = 215/314 (68%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 671533 TGTTGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 671592 ||| |||||||||||||||| | | |||| ||| |||| || | ||| || ||| Sbjct 1931 TGTGGAAGGAAAAAGAATTCCATTTGGATTTAATCATAGATCATTACCACATTTTATTAA 1872 Query 671593 ATTCGATGACAGTGCATTTTCCAGAGGTTTT-TGTCGAAATTCTTTTATTGAGGGTCTTG 671651 ||| || | | || ||||| ||| |||| |||||||| | || || | || Sbjct 1871 ATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGTC-AAATTCTTAT-TTAAGTGGATTA 1814 Query 671652 GA-CCTTTTGAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCT 671710 || ||| | || || || | |||| |||| | |||||||||||| |||| ||| Sbjct 1813 ACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGGTAGAGAAGGTATTATTGATACTGCT 1754 Query 671711 ATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATC 671770 |||||| | || ||||||||||| ||||||| | | ||||| | |||||| | Sbjct 1753 TGTAAAACATCAGAAACTGGTTATATACAAAGAAGATTAATTAAAGCTATGGAAGATGTT 1694 Query 671771 AAACAAGAATATGATGGTACAGTAAGAAATGCAAATGGTAAACTTATATCATGTGTTTAT 671830 | | | |||||| | |||||||||||| || ||||| | |||| || | | ||| Sbjct 1693 ATGGTACAGTATGATAGAACAGTAAGAAATTCATATGGTGATATTATTCAATTTTTATAT 1634 Query 671831 GGTGATAATGGTAT 671844 ||||| |||| || Sbjct 1633 GGTGAAGATGGAAT 1620 >seq9906 Length=546 Score = 104 bits (114), Expect = 2e-16 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 398879 TTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAA-GAATCAACaaaaaaaTTGTTG 398937 ||| ||||| | || |||||| ||||| |||| | | || || || |||||| ||| Sbjct 156 TTTTGGATTTAAAACATTAGAAAGGTCTTA-CTTATTACGTATTAATAATAAAATTATTG 214 Query 398938 AACGTCCTCAACACTTATTTATGAGAGTAGCTATTACACTCCATTACAGGAAAAATGATC 398997 |||||||||| || ||||| ||||||||| |||| | | ||| | | |||||| Sbjct 215 AACGTCCTCAGCATTTATTAATGAGAGTATCTATAGGAATACAT------ATAGATGATC 268 Query 398998 TCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGGATATTTTACTCACGCAACAC 399057 | || | | || ||||||||| | | | || || |||||||||||| || || | Sbjct 269 TTGAAAAGGCTTTAGAAACTTATCATTTAATGTCACAAAAATATTTTACTCATGCTACTC 328 Query 399058 CTACATTATTTAATGCTGGTACAACA 399083 |||||||||||||| | || ||| || Sbjct 329 CTACATTATTTAATTCGGGAACACCA 354 >seq651 Length=4451 Score = 98.7 bits (108), Expect = 8e-15 Identities = 304/462 (66%), Gaps = 24/462 (5%) Strand=Plus/Plus Query 626931 CATTA-ATGATGTAATCAAAACA-ATTGAGACTTATGATATTACAACTATTAGAGCATCA 626988 ||||| ||||||| || | | || ||||| || |||||||| ||||||||| | ||||| Sbjct 3226 CATTACATGATGTTAT-ATACCACATTGAAACATATGATATAACAACTATTCGTGCATCT 3284 Query 626989 ACACCTCAATTCATTATGGCTAAATACATTCAAGAAAATACTGATATTAGAGTATTATTG 627048 |||||| | ||| | | | | || | ||| || | ||||| | | | || Sbjct 3285 ACACCTATGTATATTCTTTCAAGGTTAAT---AAAAAGTAGTTGTATTAAAATGGTTTTA 3341 Query 627049 TCAGGTGAAGGTTCTGATGAAATTCATGGCAGTTATAAATA----CATGAGATCAGCGCC 627104 |||||||| || |||||||| |||| | ||| ||| ||| | ||| || Sbjct 3342 AGTGGTGAAGGATCCGATGAAATATTTGGCGGATATTTATATTTTCATAA----AGCACC 3397 Query 627105 AAACAGTCAAGAATTTCATAAAGAA--ACTATTAGACTTTTGGAAGAACTTTATCTTTTT 627162 ||| |||| ||||| | |||| || | ||| | | || || || ||| | Sbjct 3398 AAATGCCGAAGAGTTTCACAGAGAATTACAA--AGAAAAATACATGATCTACATATTTAT 3455 Query 627163 GATAACAAAAGAACTGATAGA---ACAATGGCAGGAAACGGTTTAGAAGTACGTGTACCA 627219 ||| | | || | ||| | || ||||| ||| |||||| |||||||||| Sbjct 3456 GATGTCTTACGAGCAAATAAATCTACTATGGCTTTT---GGTATAGAAGCACGTGTACCA 3512 Query 627220 TTTCTTGATTTTAATTATGTCGATTTTATTATGAATATTGATCCCAATTTATTGATGTAT 627279 ||| | ||||| | | | | ||||| |||||||||| ||||| || | ||||| | Sbjct 3513 TTTTTAGATTTAGAATTTTTAGATTTAGTTATGAATATAGATCCAAAAGAAAAGATGTGT 3572 Query 627280 AAATCTGATTATATTGAAAAGAAAATTATTAGAGATGCTTTCAAAGGCTATTTGCCCGAA 627339 | || | |||||||| | ||| | ||| ||||| |||||||| || || Sbjct 3573 TCGAATAATAAAATTGAAAAAGATATTTTAAGAAGAGCTTTTGCTGGCTATTTACCTGAT 3632 Query 627340 AATATTCTTTACAGACCAAAAGAAGCTTTTTCTGATGCTGTT 627381 | ||||||||||||| ||| ||| ||||| |||| |||| Sbjct 3633 CACATTCTTTACAGACAAAAGGAACAATTTTCGGATGGTGTT 3674 >seq154 Length=7595 Score = 95.1 bits (104), Expect = 9e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 200572 ATTCATTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATC-AATACTA 200630 ||||||||| |||||| |||||| | ||||||| || ||| ||||||||| ||||| Sbjct 6203 ATTCATTATCATGATGTGGAAATCTTAAATCGACACCTCCACTATGAATATCTAATACC- 6145 Query 200631 TTTCCTAATGTTTTCTTGATCATGGCTGAACATTCAATATGCCAACCAGGT 200681 ||||||||| | || | ||| | ||||||||||||||||||||| ||| Sbjct 6144 TTTCCTAATATGTTACTAGCCATAGTTGAACATTCAATATGCCAACCTGGT 6094 >seq4058 Length=1225 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 634451 AATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATATGGGTACCATCA 634510 ||| |||| || ||||| |||| || ||||||||| ||||||| ||||| ||| Sbjct 1218 AATGATGGAGAAGGTATACCAGTAGATATACATAAAGAAATGAATATATATGTACC-TCA 1160 Query 634511 -ATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAGGAAAAAACTGT 634569 ||||||||||| ||| | ||||| ||| |||||| ||| | || || | || Sbjct 1159 TATGATTTTTGGTGAATTATTAACATCTGATAATTATGATGATGCTGAAGACAGAATAAC 1100 Query 634570 TGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTTATTCTGTTGAATTTACTAT 634629 ||||||| ||||||||| || ||||| || | ||||||| | | ||||||||| | Sbjct 1099 AGGTGGTAGAAATGGTTTCGGAGCTAAACTAACAAATATTTTTAGTAAAGAATTTACTGT 1040 Query 634630 TGAA 634633 | || Sbjct 1039 TCAA 1036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780291926987140