Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3686 187 3e-42 seq2009 102 1e-16 >seq3686 Length=1345 Score = 187 bits (206), Expect = 3e-42 Identities = 558/846 (66%), Gaps = 20/846 (2%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 |||||| | || | ||||||||| || |||||||| || | | ||||| ||||| Sbjct 327 ATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAGTCCAT 386 Query 115122 AAAATCAAAGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATCG 115181 || ||| |||||||| | | | | ||| | ||| | || | ||||||| Sbjct 387 CCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAATAATCG 446 Query 115182 ATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGACTACA 115241 ||| |||||| |||| || || | ||||| | |||||||| || || | | ||| Sbjct 447 ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATTAAATCACA 506 Query 115242 CGGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTTC 115301 || | | || ||| ||| | |||| | | ||| || ||| | | || | || Sbjct 507 AGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATATTTTG 566 Query 115302 AATTGTATTTTGAGATGGTTTGTTTTTTAACATGTTGAATAATTCAACCGC-AAATTCTT 115360 || | || | | ||| |||| |||| | | | |||| ||| ||| ||| Sbjct 567 AACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATA-AATTAAACAATTAAAATCTG 625 Query 115361 GGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACC-TGGAAGTAAC 115419 ||| | |||||||||| ||| || | |||||||||||| |||||| || || | | Sbjct 626 TGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTAT 685 Query 115420 CCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACA 115479 | | ||||| |||||||| || ||||||||||| || || ||||| ||||| ||| Sbjct 686 TTTGT-TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACA 744 Query 115480 CACGCAAAGGCTAATAAACGTTCAGCAAATGG--TCGTTTCTTATCAAACCACTTCATAG 115537 || ||| |||| | | ||||||||| | |||| || | | | ||| || | Sbjct 745 CATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTT--ATCCATTTAGCTG 802 Query 115538 CCCATTTCGCCTTTCTTTCGATACACGGAATTGTTTGAATTGCTTCGAATAATTGTT--- 115594 ||||| || || ||| || || || ||| ||| || | ||||| | | Sbjct 803 CCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATC 862 Query 115595 TCT-TTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGT 115653 ||| |||| | || | ||||| || || || | | ||| || |||||| |||| Sbjct 863 TCTCTTTCTC----ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGT 918 Query 115654 ACCATTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTATTTCA 115713 | ||||| |||| | |||||||| | || || | | ||||| ||| Sbjct 919 ATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTC- 977 Query 115714 TCTGCAAAATT-ATTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGC 115772 ||| |||||| | || || |||||| || ||||| |||||| | | |||||||| || Sbjct 978 TCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1037 Query 115773 TAAAATATATTTTATAAAATGTTTTTCATTATCACTTAATTCATTCCAA-TCATCCATAT 115831 || | || ||||||||||||||||||||| || |||||| ||| || || | || || Sbjct 1038 TAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATT-TTTCAAAGTCTTTCAAAT 1096 Query 115832 CTTTGGAAAAGTCTATCTCTTCAGCGGTCCAATTTGACATTTGGGCCTTTTTATACAAAG 115891 | | || || ||||| |||||||| |||||| ||| | || |||||||| ||| Sbjct 1097 CACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAAT 1156 Query 115892 TCCATA 115897 |||||| Sbjct 1157 TCCATA 1162 >seq2009 Length=2334 Score = 102 bits (112), Expect = 1e-16 Identities = 197/285 (69%), Gaps = 13/285 (5%) Strand=Plus/Minus Query 11444 TTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTCACGTG 11503 ||||| | |||| |||||||||||||||||||| |||||| | ||| || || | || Sbjct 2011 TTTTCGT-CCAACAGCATCAATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTG 1953 Query 11504 CCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACG 11563 | | |||||| || | |||||| || || | || ||||| | ||||| || Sbjct 1952 CTTGTGCAAATAGTTCTCTAACTCTTGATGGTCCGATTCCCACAAATACTTCAATAAA-- 1895 Query 11564 ATGACCCCGAACACTGA-----ATAAAAGGAACGGAAGATTCACCCGCTATAGCACGTGC 11618 || || | |||||| | ||||||||| || |||||| || | ||| ||| Sbjct 1894 ATCACTTC---CACTGATATTAAAAAAAGGAACATTAGCTTCACCAGCAACAGCTTTTGC 1838 Query 11619 TAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGC 11678 ||| | ||||| || || || ||| ||| |||||||||||| |||||||||| || Sbjct 1837 TAATAAAGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGC 1778 Query 11679 ACC-GGTACCAAAGTACTTTTCTGGCGCCTTGAGAAAATCAACAA 11722 ||| ||| | || ||| |||| || | ||||||||||| Sbjct 1777 ACCTAATACTTGA-TATTTTGCTGGATTTTTCAAAAAATCAACAA 1734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635047930379600