Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2587 123 3e-23 >seq2587 Length=1884 Score = 123 bits (136), Expect = 3e-23 Identities = 450/696 (65%), Gaps = 9/696 (1%) Strand=Plus/Minus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAA 112357 |||| || |||||| |||||||||| | || ||||| || ||||| | ||| | || Sbjct 1523 CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AA 1465 Query 112358 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC 112417 |||||| ||||| || || || | || ||| ||||| | |||| ||| Sbjct 1464 TCAAAAAAATTTAGGAACAATTAAATGCAGTAATTAATGTTGTGAAATTATTGAATATAC 1405 Query 112418 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 112477 | ||||| ||||| ||||| | || || || || | ||| | ||| || Sbjct 1404 ATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATTTGTTGA 1345 Query 112478 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAA 112537 | ||| | ||| |||| ||| | ||||| | | || |||| |||| | | || | Sbjct 1344 TAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAG 1285 Query 112538 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 112597 ||| || | | | ||||||| ||||||| ||| || ||| | || | ||| || Sbjct 1284 AAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAA 1225 Query 112598 TATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTG 112657 || ||||| | || ||||| | || || ||||| | || ||| ||| || |||| Sbjct 1224 TAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTT 1165 Query 112658 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAAT 112717 | | ||| ||| || || ||||| || ||| | ||| | |||||||| || || Sbjct 1164 AAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTAT 1105 Query 112718 GTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 112777 |||| | || ||| | || | | || |||||| | || ||| ||||||||| | Sbjct 1104 GTATTATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATC 1045 Query 112778 CTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837 | | | ||| |||||| ||||| | | ||||||||||||| |||| | | | Sbjct 1044 ATATCAAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAG 986 Query 112838 CA-AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTT 112892 | | | | || || ||||| | | || || | ||| | | | || | Sbjct 985 TAGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGTAAACACGGATTA 927 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 | || |||| | | ||||| ||||||||||| || || ||||||| || || ||| Sbjct 926 AGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAAT 867 Query 112953 AATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 ||||||| ||||||||| || || | ||||| ||| Sbjct 866 AATGAATCCTTTGAACCATATACAAGTAACATTTAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620659453296800