Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2587 118 1e-21 >seq2587 Length=1884 Score = 118 bits (130), Expect = 1e-21 Identities = 334/502 (67%), Gaps = 11/502 (2%) Strand=Plus/Plus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | || || ||||||||| |||||||||| || || ||||||| || || Sbjct 831 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 890 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TTTCCTTGATGCGTT 106052 ||||||||||| ||||| | | |||| || | | || | ||| ||| | || Sbjct 891 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTT 950 Query 106053 CCTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAAT 106108 || | || |||||| || || || | | ||| | |||| ||||||||||| Sbjct 951 TTTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAAT 1008 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | |||||| | ||| ||| | | ||| ||||| | || ||| Sbjct 1009 TGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT 1068 Query 106169 GCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 ||||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 1069 GCCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 1127 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 1128 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 1187 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAA 106346 ||||| || || | ||||||||||| |||| |||| || ||||| ||| | || Sbjct 1188 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAA 1246 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || | Sbjct 1247 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 1306 Query 106407 CATGAAGTTTTTCATAATCAAA 106428 ||| | ||||| | ||| ||| Sbjct 1307 CATATAATTTTTTAAAATTAAA 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589901963815600