Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq252 125 9e-24 seq5459 122 1e-22 seq3518 91.5 2e-13 >seq252 Length=6430 Score = 125 bits (138), Expect = 9e-24 Identities = 424/651 (65%), Gaps = 16/651 (2%) Strand=Plus/Minus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTT-TACGCC 104854 ||||| ||||||||||| ||| | ||||| | |||||||||||| || || || | Sbjct 5654 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTAAGAG 5598 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAAT 104914 ||| || |||| || ||||| | || | || ||||||| || ||| Sbjct 5597 G-TATCATTGAAGAGTTGCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 5539 Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGA 104974 |||| || | | ||||| | | |||||| || | ||||||||||| | | | Sbjct 5538 GAAAAAAACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 5479 Query 104975 TTTCACTTTCGAAAAGAAGGTGAT---TTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 || |||| | ||||| | || ||||| |||||||| |||||||||||||| || Sbjct 5478 TTA---TTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCAC 5422 Query 105032 GCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATT 105090 ||| ||| |||||| || | || || | || |||| | ||||| | || || || Sbjct 5421 TTTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTT 5363 Query 105091 AAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAG 105150 || | ||||| | || ||||| | || ||| || |||| ||| || | Sbjct 5362 AAAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGC 5303 Query 105151 TTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATT 105210 |||||||| | | ||| | ||||| | || || |||||| ||| ||||| Sbjct 5302 ATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATT 5243 Query 105211 TTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGG 105270 ||| || || || | ||| ||| |||||||||||||| |||||||| Sbjct 5242 TTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGG 5186 Query 105271 ATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATG 105330 | ||||| |||| ||||||| || |||||| | || | | | | || || Sbjct 5185 TCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 5126 Query 105331 GTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAA 105390 |||||| || || | ||||||| ||| || ||| ||| |||||| ||| ||| Sbjct 5125 ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAA 5066 Query 105391 CCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 |||||||| |||||| | || ||||| |||| ||| || | ||||| Sbjct 5065 TCATGTTGAAAGCTTAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCC 5015 >seq5459 Length=938 Score = 122 bits (134), Expect = 1e-22 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || ||| |||| | |||| |||||| |||||||| ||||||| ||||| | | || Sbjct 5 TAATGGTAGAATGCTAAAATCTAAAATATTTATAGGACCAACATTTTATCAAAGATTAAA 64 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| |||||||||| ||||| |||||| || | |||| | |||||| Sbjct 65 ACATATGGTGGAAGATAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-A 123 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| |||||||||||||||||||||| || Sbjct 124 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAG 183 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||||| | ||||||| | | || | ||||| ||| Sbjct 184 ATTGTATGATATCTCATGGATCTGCTAAAATGTTAAAGGAA 224 >seq3518 Length=1411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 126100 TAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAAT-TTAATGGTCTA 126155 || ||||||| ||||||||| | || ||||| | || |||||| || | | || Sbjct 747 TATATTATCCACAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTTA 691 Query 126156 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAAT 126215 || || | || ||| || ||||||||||||||||| |||||| || ||||||||| Sbjct 690 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAAT 632 Query 126216 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | || | ||| || |||| || || | || |||||| Sbjct 631 CAAGAAGATAGTTTGATCATGAATCAATCATCCATTGATCGGGGGTTATTT 581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658315220872400