Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3686 333 3e-86 seq2587 324 2e-83 seq9906 159 4e-34 seq8161 98.7 1e-15 seq3553 98.7 1e-15 >seq3686 Length=1345 Score = 333 bits (368), Expect = 3e-86 Identities = 619/893 (69%), Gaps = 23/893 (3%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 321 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 380 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | | ||||| |||||| Sbjct 381 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA 440 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| ||| ||| ||| | |||||||||| || Sbjct 441 TAATCG---ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 497 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| | Sbjct 498 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 557 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACA 18962 ||| | ||| ||||| | | | ||| || | | | || || ||||| Sbjct 558 TATATTTTGAACAACCTCTTC--TGGTAATTTATTTTCCAACAAGCTATAA-ATTAAACA 614 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||| |||| ||| || |||||||| |||||||||||| |||||||||||| Sbjct 615 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 674 Query 19023 AGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 | | | | | | || ||||| ||||| ||||| | | ||| |||| ||| ||| Sbjct 675 ATGTA--ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 732 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||| ||| || | |||||| || || || || | || || Sbjct 733 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT-ATCATTT 789 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| |||||| || || ||||||| ||| || | || |||| || | Sbjct 790 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGA 849 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | ||| | ||| ||| ||| ||| || |||||||| || || Sbjct 850 AATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTT 909 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || || |||||||| | ||| || ||||| | ||||| | | ||||| |||| Sbjct 910 TCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATT 969 Query 19321 TGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTATTCCATCACTAGCTGC 19379 |||||||| || ||||| || | | | |||||||| |||||||||||||||||||| Sbjct 970 TGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGC 1028 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA-T 19438 ||||||||||| |||||||| |||||||||||||||| | ||||| | ||| || | Sbjct 1029 AAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAAT-TTTTCAAAGT 1087 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || | ||| | |||||||||| ||||||| | |||||||| || ||||| ||||||| Sbjct 1088 CTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTT 1147 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||| | ||||||| ||| |||| |||||| || ||||||| || Sbjct 1148 TATAAAAATTCCATACTTCAGGATACATAATAGGATGTAATGTAAATCTACTT 1200 >seq2587 Length=1884 Score = 324 bits (358), Expect = 2e-83 Identities = 864/1306 (66%), Gaps = 45/1306 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| ||||| || ||| | |||||| |||||||| | |||| ||||| || || Sbjct 594 CTGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTC 653 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | | ||| | ||| || | | || ||| ||||| | Sbjct 654 CCAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACA-- 711 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 712 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 770 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||||| ||||| ||| || || | | | Sbjct 771 AAGATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTA 830 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||||| Sbjct 831 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 890 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNN 47475 ||||| ||||| | ||| | || ||| | ||||||| ||| | ||| ||| | Sbjct 891 AGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTT 949 Query 47476 NNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCATATT 47532 | |||||||||| | | | || | ||||||| | |||| ||| Sbjct 950 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATT 1009 Query 47533 GAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAG 47592 | | ||||||| ||| ||| ||| | ||||| || ||| || || || || | Sbjct 1010 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 1069 Query 47593 CGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | | |||| || || | ||| || ||| |||||| || |||||||||||| || | || Sbjct 1070 CCAATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 1127 Query 47651 TAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 || |||| || |||||| |||||| | ||||| ||||||||||| | Sbjct 1128 TA-ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 1186 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 ||||||| || || || ||||| |||||||| ||||||| || || |||||| | Sbjct 1187 ATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAA 1246 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 |||||| | ||| | || |||||||||| || | ||| | Sbjct 1247 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 1306 Query 47830 CTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTGCTA 47883 | |||||| ||||||| ||| ||| || || ||| |||||| | | ||| | Sbjct 1307 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 1366 Query 47884 TAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCAC 47943 | || |||| |||||| |||||||| |||| || ||||||| || |||||| || Sbjct 1367 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 1426 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 || ||||| ||||| || || || ||||||| ||||| ||| | ||||||| Sbjct 1427 ATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAAT--TACATGC 1484 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG-ATTTCC 48060 || || || | |||| | ||| ||||||||||| || || | |||| | || Sbjct 1485 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCC 1544 Query 48061 AAACA----GTCCTAGCCTT-TATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGT 48115 | | | || | || || | | | | || ||| || | ||||||||| || Sbjct 1545 ATAAATCTTGTGCAAGAATTGTTTTTTTTCCCAAGATTT----TCTTCTTCGTATTTTGT 1600 Query 48116 ATATAACTTCT-CAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| || | ||||||| || || | | | ||| || |||||||| ||||| | Sbjct 1601 ATATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGC 1660 Query 48175 AC-ATCAATGACCAATCCTCATCATTTTTTACTCTAGT-CATAAATATATCTGGTATCCA 48232 || || || | ||| | || || | |||||||| | |||||||| ||| |||| ||| Sbjct 1661 ACCATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCA 1720 Query 48233 AAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTC 48292 || ||| ||||||||| | || ||| | |||||| || ||| ||| || | | || Sbjct 1721 AATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATC 1780 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCG 48352 | ||| || | ||||| | |||||||||||| | ||||| | || | | || || Sbjct 1781 TAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAG-CAAAAGAACTTTTCT 1839 Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 ||| | || |||||||||| |||||| || |||| ||| ||||| Sbjct 1840 TTTCCT-CCACCTTGATCTACATATCTTGCTGTATAATTAAAAACT 1884 >seq9906 Length=546 Score = 159 bits (176), Expect = 4e-34 Identities = 271/393 (69%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 ||| ||||| | |||||||||||||||||| ||||| || ||| |||||| Sbjct 546 CATCGGGACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCT 487 Query 48464 TATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTT 48523 |||| | | | ||||||||| ||||| ||||| || | ||||| | || Sbjct 486 AATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTT 427 Query 48524 AAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGA 48583 | || ||| | || |||||||| |||| | |||| ||||| ||| || ||| Sbjct 426 TAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGA 367 Query 48584 CATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTT 48643 |||||| || ||||| |||||||||||||| |||| |||||| |||| |||| Sbjct 366 CATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTT 307 Query 48644 CTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTAT 48703 | ||| | || | ||| ||||| | | | || | ||| | |||||| ||||| Sbjct 306 TTGTGACATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTAT 247 Query 48704 AGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAG 48763 |||||| | |||||| | || ||||| | ||||| |||||| ||||| || || | Sbjct 246 AGATACTCTCATTAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAA 187 Query 48764 ATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 || || |||| ||||||||||| |||||||| Sbjct 186 GTAAGACCTTTCTAATGTTTTAAATCCAAAATA 154 >seq8161 Length=638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 484 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 425 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTA---ATTCTAA 18785 ||||| || ||||||||||||| || | | ||| | | |||| ||||||| Sbjct 424 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA 365 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || || ||| || ||||||| ||| ||| ||| | |||||||||| || Sbjct 364 ---TAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 308 Query 18846 TAATTTAACAGGTA 18859 ||| | | ||||| Sbjct 307 TAAATCACAAGGTA 294 >seq3553 Length=1395 Score = 98.7 bits (108), Expect = 1e-15 Identities = 113/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 1232 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1291 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTA---ATTCTAA 18785 ||||| || ||||||||||||| || | | ||| | | |||| ||||||| Sbjct 1292 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA 1351 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATAT 18816 || || ||| || ||||||| ||| ||| Sbjct 1352 ---TAATCGATCAGCAACAAATTCAATGTAT 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562033688211600