Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq7187 172 4e-37 seq1134 170 2e-36 seq304 152 4e-31 seq1362 149 5e-30 seq632 143 2e-28 seq4327 132 4e-25 seq1621 131 1e-24 seq2587 125 6e-23 seq3125 100 2e-15 seq2525 91.5 1e-12 seq691 91.5 1e-12 seq6820 87.8 1e-11 >seq7187 Length=700 Score = 172 bits (190), Expect = 4e-37 Identities = 243/340 (71%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 || |||||||||||||| | | |||| | |||||| |||| | ||||| || || Sbjct 330 AGAGCCAAATTTGAAGAATTAAATGATGATTTATTTAGAGAAACTTTAGAACCTGTTAAA 271 Query 552075 CAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGT 552134 |||| ||| ||| |||| ||| ||| |||| | |||||||||| | || || Sbjct 270 AAAGTATTAGATGATGCAAAATATGAAAAAAGCAAAATCGATGAAATTGTTTTAGTAGGA 211 Query 552135 GGATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAA 552193 || || || | || |||||||||| |||| |||| || ||||||||||||| | Sbjct 210 GGTTCAACTCGTATACCTAAAATTCAACAAATTATTAAAGAGTT-TTTCAATGGTAAAGA 152 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 | |||| | || |||| |||||||| || || || |||||||| || |||||||| | Sbjct 151 ACCAAATAGAGGTATTAACCCAGATGAAGCCGTAGCATATGGTGCTGCTATTCAAGCTGG 92 Query 552254 TATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCC 552313 |||| ||| ||| ||| || ||||| || ||||| | ||||||||||||| Sbjct 91 TATTATTTTAGGA---------GAAGAATTACAAGATGTTGTATTGTTAGATGTTACTCC 41 Query 552314 TCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 || || | ||| | ||||| ||||| |||||||||||| Sbjct 40 ATTAACTTTAGGTATTGAAACTGTTGGTGGTATTATGACT 1 >seq1134 Length=3426 Score = 170 bits (188), Expect = 2e-36 Identities = 408/605 (67%), Gaps = 19/605 (3%) Strand=Plus/Plus Query 428095 TGAATAACCGGTTCCAATTCCTTCTGTACCATTTACAAGAATCATTGGAATGACTGGTGC 428154 |||||| || ||||| |||||||| |||||||| ||||| | ||||| |||||| Sbjct 2295 TGAATACCCAGTTCCTATTCCTTCACATCCATTTACTAGAATTGTAGGAATAACTGGTAT 2354 Query 428155 ATAATATTGTGGTTCAATCATTTTATTATCTTCATATTGTAAATGTAAAATATCAAAATC 428214 ||||||||||||||| || ||| ||||||| | | | |||||| | || Sbjct 2355 ATAATATTGTGGTTCTATTTTTTGTCCTTCTTCATTTAAATATTTTAAAATTGGATCGTC 2414 Query 428215 ATGCTCGATAAATAtttttttAGCCAATTCATCAAGTTGTGTAAAGATATATCTTGCGCT 428274 | || ||||||| || ||| || |||||| |||||| ||||| || || Sbjct 2415 AAATTCATTAAATATACTTCTAGTAGATGATGCAAGTTTTGTAAATATATACCTAGCTGC 2474 Query 428275 TGCGGAATCTTTACCTCCTGACATTCTAGTTCCAAATTGTCCATTAGGCATC-AATAAAT 428333 || | ||| ||||| ||| ||||| | |||||||||||| ||| || | |||| Sbjct 2475 TGATGCATCCTTACCACCTTCTTTTCTACTACCAAATTGTCCA-CAGGGTTCTAGAAAAT 2533 Query 428334 TAATATTATTACTTCCCACATAATTTTGGGCCATATTAACAATGGTACTAGT--TAAGGA 428391 | ||||| || || ||| | |||| |||||||| | ||| || | || ||| || Sbjct 2534 TTATATTGTTTGAACCGACAAATGTTTGCGCCATATTTATAATAGT--TTGTTGTAATGA 2591 Query 428392 TTGTTCACCATGATGATATTTAGTTCTTTTTGAAACTGCACCTTGTAATTCTGATACCTT 428451 | |||||||||||||||| | | || || || ||| | | | || || Sbjct 2592 TGATTCACCATGATGATATGCACTATGTTCTGCAATATAACCAACAAGCTGCGCGACTTT 2651 Query 428452 TATTTCTTCTTTATAAATACCTTCTTCTACTG-ATCCATAAAATACTTTGCGTTGTGATG 428510 ||| | || ||||| ||||| || | | ||||| || ||||| | |||| || Sbjct 2652 ACATTCAT-TTCTTAAAT---TTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCTG 2707 Query 428511 GTTTGAATCCATCCATAATATTAGGTATAGATCTTAAATTATCATCCACTGAGAAT--GA 428568 |||| |||||||||||||||| |||||| |||| |||||| | ||||| | Sbjct 2708 GTTTCCATCCATCCATAATATTTGGTATACTTCTTTCTGTATCAT--ATCTAGAATAATA 2765 Query 428569 TATTAGTTCTTGATGAATGAAATCATAATATGATACTCGTTTTTGTGCATTATCAATGTA 428628 ||||| ||||| || | |||||||||||||||| ||||| | || ||||| || Sbjct 2766 TATTAATTCTTTATTTACAAAATCATAATATGATAAATCTTTTTCTTTATGATCAACATA 2825 Query 428629 ATTGTTGGGATTAT--AAGTATTTACCCATATTTTTCGATCATTTTCTCtttttttATCA 428686 || | ||| || | | || ||||| ||| ||||| | |||||||||| | Sbjct 2826 --TGAACCAAGTATAAAATTTTGTAGCCATAATTTACGATCTTCAATTCTTTTTTTACTA 2883 Query 428687 AAAGC 428691 ||||| Sbjct 2884 AAAGC 2888 >seq304 Length=6038 Score = 152 bits (168), Expect = 4e-31 Identities = 135/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 930654 AAAGTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTG 930713 || ||||| |||||||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 1583 AATGTATTGATTGATTTTTCTTCACCAAATATTGCAAAAGAAATGCATGTTGGTCATTTA 1524 Query 930714 CGTTCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAGTAAAGTT 930773 | || ||||| | ||||| || | | | | ||| ||||| || | ||||||| Sbjct 1523 AGATCAACCATATTAGGAGATACTATTTCCAAAGTATTTGAATTTT-TAAAAGTAAAAAC 1465 Query 930774 -CATCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATG 930818 ||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1464 ACATAGAGTCAATCATGTTGGTGATTGGGGAACACAATTTGGTATG 1419 >seq1362 Length=3065 Score = 149 bits (164), Expect = 5e-30 Identities = 336/490 (69%), Gaps = 20/490 (4%) Strand=Plus/Plus Query 367267 GATGGACCTCCATTTGCCACAGG--TACAATGCATTATGGTCATATTTTAGTATCATCTA 367324 |||||||| |||||||| || || ||| | |||||||| ||| | |||| | | | Sbjct 1618 GATGGACCACCATTTGCTACTGGATTACCA--CATTATGGGCATTTATTAGCAGGAATAA 1675 Query 367325 TTAAAGACACCATAATTAGATATTTTACCATGAAG--GGTTACAAAGTTGATAGAAGAAA 367382 | ||||| ||| |||||||||| || || || || ||| || ||| || Sbjct 1676 TAAAAGATTGTGTAACTAGATATTTTT--ATCAATCTGGATATTCAGTAGAAAGACGATT 1733 Query 367383 TTCTTGGGATTGTCATGGAGTTCCAATTGAA-ATGT--TAGCTAAA-AAAGTAATCGGAT 367438 | |||||||||||||||| | || ||||| ||| ||| ||| ||| |||| || Sbjct 1734 TGGTTGGGATTGTCATGGATTACCTGTTGAATATGAAATAGAGAAAGAAAATAAT---AT 1790 Query 367439 ACACAACAAAGAAAGAATTATATGATTATGGAATTA-ATAATCATAATGATATTTGTCGT 367497 |||| |||||| || ||| | | |||| | || || ||||||| | ||| | Sbjct 1791 TAACAAGAAAGAA-GATATAT-TAAAAATGGGAATAGATGTATATAATGAAAAATGTAGA 1848 Query 367498 AATTTGGTTTTAAAATGTGCTGATCGCTGGTATCAAGATT-TTGAACGTATTGGAAGATG 367556 | | | |||||||||| | || || ||| | || | ||||| | ||||||||||| Sbjct 1849 AGTATAGTTTTAAAATATTCTAATGAATGGG-TAAATACCGTTGAAAGAATTGGAAGATG 1907 Query 367557 GATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTCATGGAATCTGTTATTTG 367616 ||||||| | ||||||| |||||||| ||||||| ||||| |||||| |||| || Sbjct 1908 GATTGACTTTGAAAATGATTATAAAACTATGGATAAAAATTTTATGGAAAGTGTTTGGTG 1967 Query 367617 GGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGTTATAAAGTAATGCCATA 367676 | |||| |||||||| || | |||| | || | |||||| |||||||| Sbjct 1968 GATCTTTAGTCAATTATATAAAAAAAATTATATTTATAAATCATTTAAAGTTATGCCATA 2027 Query 367677 TTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAACAAAATTATCGAGAAGT 367736 |||| | |||||||| || | ||| |||||||| || ||||||| ||| || Sbjct 2028 TTCATGTAAATGTAATACACCTATATCAAATTTTGAATTAAATTTAAATTATAAAGATGT 2087 Query 367737 AGTTGATCCA 367746 ||||||| Sbjct 2088 TTCTGATCCA 2097 >seq632 Length=4523 Score = 143 bits (158), Expect = 2e-28 Identities = 401/605 (66%), Gaps = 43/605 (7%) Strand=Plus/Plus Query 1047046 ATTGCTGATTGGTTTGCACAAATGAATCATAAAATGGGAGGTGATTTAGAAAAAATTAGA 1047105 ||||||||||||||||| ||| | ||| |||||||| || |||||| | ||||| | | Sbjct 3172 ATTGCTGATTGGTTTGCTCAACTTAATAATAAAATGTCTGGAGATTTAAATAAAATAAAA 3231 Query 1047106 GATGTGGGTAAATATTTCATTGAAGTATTTAAAGCATGTGGTATTAATATGTCTGGCACT 1047165 | || || ||||||| |||||||||| ||| |||||||| |||||| | Sbjct 3232 AAGGTTGGACAATATTTTATTGAAGTATGGAAAAGTTGTGGTATGAATATGGAAAATGTT 3291 Query 1047166 AAATTTATCTGGGCTAGTGAATTTTTTAATGATAATGCTACAAAATATTTTGAAAGAATG 1047225 ||||||| |||||||||| || ||| | || | | | || || ||| || | Sbjct 3292 CAATTTATGTGGGCTAGTG-ATGAAATAAATAAAAACCCAGATAA-ATATTGGTCGACAG 3349 Query 1047226 TTACATATTGCTA-ATCAGACATCTTTAGCA-----CGTGCTAAAAGATGTTGTCAAATT 1047279 | ||||| || |||| | |||| | || ||||||||||| || Sbjct 3350 T----TATTGATATATCAAGGAGTTTTAATATTAATCGAATTAAAAGATGTTTAACTATA 3405 Query 1047280 ATGGGACGTAGAGAAGGTGATG--AATTATCTTCGTCACAAATTATATATCCTTGTATGC 1047337 ||||| || | ||||| || | ||||| | || |||||| |||| || ||||||| Sbjct 3406 ATGGGTCGAACTGAAGGAGAAGATAATTA--CTGTTCTCAAATTTTATACCCATGTATGC 3463 Query 1047338 AAGTAGCAGATATTTTTGAATTAAATCCAAATGGAATTGATATTTGTCAACTTGGTGTTG 1047397 || ||||||||||| |||||| | |||||||||||| | || || Sbjct 3464 AATGTGCAGATATTTTCTTTTTAAAT---------GTCGATATTTGTCAATTAGGGACTG 3514 Query 1047398 ATCAAAGAAAAGTTAATATGTTAGCCATTGAATAT-----GCTAAACGTAATAATTTAAA 1047452 ||||||||||||| |||||| |||| | |||||| |||| ||||| ||| Sbjct 3515 ATCAAAGAAAAGTAAATATGCTAGCTAGAGAATATTGTGATATAAAAAAAATAA--AAAA 3572 Query 1047453 AACACCAATTATTTTATCTCACCATATGTTAATGGGATTGAAAG-GTTCCAAAAATAAAA 1047511 || ||| ||||||||||||| ||| || || || || | ||| || |||| Sbjct 3573 AAAACCTGTTATTTTATCTCATGGAATGCTACCAGGTTTATTAGAGGGACAAGAA-AAAA 3631 Query 1047512 TGAGTAAATCTGATCCTGAAAA---TGCCATATTTATGGAAGATAGTCGTGAAGATATAT 1047568 || || || || |||||| ||| || |||||||| |||| | | |||| | Sbjct 3632 TGTCAAAGTCCGA---TGAAAACTCTGCAATTTTTATGGATGATAATGAAGCAGATGTTA 3688 Query 1047569 TTaaaaaaaTACACAAAGCATATTGC---ACAGACGAAATTATTGATAATCCAATTTATG 1047625 || ||||| | |||| |||||| || | | |||| ||||||| |||| || Sbjct 3689 ATAGGAAAATTAAAAAAGGCTATTGCCCTCCAAATGTAATTGAAAATAATCCTATTTTTG 3748 Query 1047626 AATAT 1047630 |||| Sbjct 3749 CATAT 3753 >seq4327 Length=1153 Score = 132 bits (146), Expect = 4e-25 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 563265 TACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 ||| | ||| | ||| ||| | |||| ||| || || |||| || |||||| |||| Sbjct 515 TACCAAATGTAAGGTTGACTCTTTTTG--AATGTTATAGTCAGATAATGTTCTTCCATCT 572 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || | ||||||||| || ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 573 TCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCT 632 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGT 563441 || |||||| ||| || ||||||||||||| || ||| || ||||| | || Sbjct 633 TGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACA-TCAAGAGTGATTGT 691 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || | ||||| || || |||||||| Sbjct 692 TTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 724 >seq1621 Length=2725 Score = 131 bits (144), Expect = 1e-24 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 390811 ATACCATTATCACCATATACACATTGAATTAATTTGTCATTGGCATTTCTTACGGTACCA 390870 || |||| |||||||||| | ||||||| | | ||| | ||||||||| || | | Sbjct 1620 ATTCCATCTTCACCATATAAAAATTGAATAATATCACCATATGAATTTCTTACTGTTCTA 1679 Query 390871 TCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATATAACCAGTG 390930 ||||||| ||| ||| ||||| | ||||| |||| ||||||| ||||||||||| Sbjct 1680 TCATACTGTACCATAACATCTTCCATAGCTTTAATTAATCTTCTTTGTATATAACCAGTT 1739 Query 390931 TCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAGAAA 390990 |||| |||||| ||||||| ||||||||||||||| ||| ||||| | || || || Sbjct 1740 TCTGATGTTTTACAAGCAGTATCAATAATACCTTCTCTACCTCCCATAGCATGAAAAAAG 1799 Query 390991 AATTC 390995 | ||| Sbjct 1800 ACTTC 1804 >seq2587 Length=1884 Score = 125 bits (138), Expect = 6e-23 Identities = 386/588 (66%), Gaps = 18/588 (3%) Strand=Plus/Plus Query 684506 ATTCCATAAATCAAATTGGAATTTTCCTTTGGAAAGAGGACTTCCTATAAATGTTTCATA 684565 |||||| | ||||||||| ||| |||||| | ||||| ||| | ||| |||||| Sbjct 993 ATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATA 1052 Query 684566 AGCACCAAATTCTTTGGATAATTTCATTGATTCTTCCAGACAACCAAAATAAATAGTTTC 684625 | ||| | ||| | |||| | || ||| | | | || |||| |||||||| Sbjct 1053 TGGTCCACTTACTTGTGCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTC 1112 Query 684626 AAATATTTTACGATTGAGATCGCGAGCCAATTCAGAATCAAATGG-TGTTTTAAAAATCG 684684 ||||||| | | ||| | || ||| |||||| ||| |||| | | |||||| | Sbjct 1113 AAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAA---G 1169 Query 684685 CAAAAA--CATCCGCTACTCCTTGGACACCAACACCAATTGGCCTATGTTTAATATTAGA 684742 || ||| ||| |||| |||||| || || | ||||| || |||||| | |||| || Sbjct 1170 CATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGA 1229 Query 684743 TACACGTGTTTTATCAACTGGATAAAAATTAATATCAATAACATTATTAAGATTTCTTGT 684802 | | || | |||||||||| |||| | ||||||| |||| | |||||| || Sbjct 1230 TCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGT 1289 Query 684803 CATAATTCCTGACACTTTCCGTAACATATCATAATCGAATTCTGGTACTCCATTTTTATG 684862 |||||| | | | ||| | | | ||| |||||| ||||| | Sbjct 1290 AATAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCT-------TTTTTTTCTC 1342 Query 684863 TAT-TATGAATCTG-GGAAGACATATTGATGACAAATTACAAGTGGCATATTCATCCGCT 684920 ||| | ||| || || || || || | ||||||||| || |||||| | | Sbjct 1343 TATCAACAAATTTGCATAATGCA-ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGT 1401 Query 684921 GATGAGTATTCTACAATTTCCGAACAAAGATTTGATCCATTAATAACGCCAACATTAATT 684980 |||| ||||| | |||||| |||| ||| | ||||| || | ||| || Sbjct 1402 GATGTATATTCAATAATTTCACAACATTAATTACTGCATTTAATTGTTCCTAAATTTTTT 1461 Query 684981 TGATTGGACTTATAATTAACAGCATCTTTAAAAACAATATATGGTACTCCGGTTTCAATT 685040 ||||| || ||| ||||| ||||||||| | | ||||||||||| || ||||| ||| Sbjct 1462 TGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATT 1521 Query 685041 TGTGTTTCCATAATTTTAAA-CCATAAATCACGAGCAGATATTTGTTT 685087 || ||| | || ||| ||||||||| | ||| | | |||||| Sbjct 1522 TGGCTTTGTAATATAGCAAACCCATAAATCTTGTGCA-AGAATTGTTT 1568 >seq3125 Length=1586 Score = 100 bits (110), Expect = 2e-15 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||| ||||| |||||||| || || || |||||||||||||| | ||||||| | ||| Sbjct 1243 TATTGGTATCGATTTAGGTACTACTTACAGTTGTGTTGGTGTATTTAAAAATGGAAGAGT 1302 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 |||||| | ||||||| ||||||| | | ||||||||| ||||| || || || Sbjct 1303 TGAAATATTAAACAATGATTTAGGTAACCGTATTACTCCATCATATGTATCATTTGTTGA 1362 Query 550114 AACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATAC 550173 ||| ||||||||| ||||| |||| |||| ||| | || || | || Sbjct 1363 TGGAGAAAGGAAAGTTGGTGAAGCAGCTAAATTAGAAGCTACTTTACACCCAACTCAAAC 1422 Query 550174 TATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGAT 550216 | | ||||||| ||| | | || || || | ||| ||||| Sbjct 1423 TGTATTTGATGTTAAGAGACTTATAGGTAGGAAATTTGATGAT 1465 >seq2525 Length=1925 Score = 91.5 bits (100), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 |||||||||| |||||||| || |||||||||||||| || | || || | Sbjct 1916 AAAAAATCTCAAGTATTTTCAACTGCAGCAGATAATCAAACTCAAGTCAGTATCAAAGTA 1857 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 ||| ||||||||||| || | | || ||||| || ||| | ||| |||| | Sbjct 1856 TTTCAAGGAGAAAGAGAAATGGCCTGTGACAATAAAATGCTAGGTTCATTTGATTTGGTT 1797 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| || || || || | || || || ||||||||||| || || ||| | ||||| Sbjct 1796 GGTATACCACCAGCCCCAAGAGGTGTTCCACAAATTGAAGTCACATTTGATGTAGATGCA 1737 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAAA 552599 |||| |||| | ||| | | ||| |||||| Sbjct 1736 AATGCAATTATTAATATTTCAGCTATCGATAAA 1704 >seq691 Length=4347 Score = 91.5 bits (100), Expect = 1e-12 Identities = 198/289 (69%), Gaps = 22/289 (8%) Strand=Plus/Minus Query 397049 TATTAGAATTAAATGCATCAAATGAACGTGGTATTGAAACTGT---TAGAACTAAAATTA 397105 |||||||||||||||||||| |||| | ||||| |||||| | || |||| | Sbjct 3090 TATTAGAATTAAATGCATCAGATGACAGAGGTAT---AACTGTGGTTCGAGAGCAAATAA 3034 Query 397106 AAA-ATTT--TGTATCAAGTAAAAATACTATATTTTTGCCAATGGAATTAAGAAACATAT 397162 ||| |||| || ||||| |||| | |||| | || || | ||||| | | Sbjct 3033 AAACATTTGCTGAATCAA--AAAATCATTATAATATT-----TGTGA--AAGAACCTCTT 2983 Query 397163 TTAAACTAGTAATATTAGATGAAATTGATTCCATGACAGTAGAAGCTCAAGGAATGTTAA 397222 | ||||| | |||||||||||| |||| |||||| | || ||| |||| || Sbjct 2982 TAAAACTGATTATATTAGATGAAGCTGATCATATGACATTTCCTGCACAA--AATGCTAT 2925 Query 397223 GACAA--ACTATTGAGAAAAATAGCAAAACTACACGTTTTTGCTTGATATGTAATGACAT 397280 || || | ||| || || || ||||| | ||||||||||| ||||||||| | | Sbjct 2924 GAGAAGAATTATGGAAAATTATGCCAAAAATGTCCGTTTTTGCTTAATATGTAATTATGT 2865 Query 397281 AGATAAAATAAATTTAGCTTTACAGTCAAGATGTTCACTTTTTAGATTT 397329 ||||||| | |||| |||| ||||||||| || ||| ||||| Sbjct 2864 TAATAAAATTACACCAGCTATACAATCAAGATGTACATCATTTCGATTT 2816 >seq6820 Length=747 Score = 87.8 bits (96), Expect = 1e-11 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 549979 GTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTG 550038 |||||||| | ||||||||||| |||||||| ||||| || ||||||||||| || Sbjct 649 GTCAAACA---TCGCTATAGGTATCGATTTAGGTACCACTTACTCCTGTGTTGGTGTATG 705 Query 550039 GCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAA 550080 | ||||| || ||||| || ||||| || ||||||||||| Sbjct 706 GAGAAATGAAAATGTTGATATAATTGCTAACGATCAAGGTAA 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028730664588100