Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3686 289 3e-73 >seq3686 Length=1345 Score = 289 bits (320), Expect = 3e-73 Identities = 569/833 (68%), Gaps = 19/833 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| ||| |||||| |||| || |||||||| ||||||| Sbjct 309 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 368 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||||| ||||| || ||||||||| || || | | | | | || Sbjct 369 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACC 428 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| ||||||||||| ||||||| | |||| ||| | Sbjct 429 TAAACATTC--TAATAATCG-ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGA 485 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || || |||| | |||||| | || Sbjct 486 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 545 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||||||||| || ||| ||||| | | || || || | || | Sbjct 546 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATA 605 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| |||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 606 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 665 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 ||||| || | | | | | |||||||| |||||||||||| |||| |||| Sbjct 666 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 725 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || || ||||| || |||| ||||||| | | | | |||| | | Sbjct 726 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AGTTCGT 782 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 |||| |||||||| || ||| ||| || ||| | | || ||||||| Sbjct 783 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 842 Query 37409 TGCTTTTAAGAGAAAGtttttttCT-TCACT-ATCTGTTATATAAGTATCAATTAGTAAA 37466 || | || | || || | ||| | || ||| | |||||| ||||||||| |||| Sbjct 843 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 900 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||| |||||||||| |||||||||| |||||| |||||| ||||||| | ||| Sbjct 901 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 960 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 ||| || ||| || || | ||||| | ||||||| ||||| ||||| |||||| Sbjct 961 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1020 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAAT 37643 ||||||||||| || || || |||| ||||||||||||| |||||| |||| |||| Sbjct 1021 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT---TAAT 1077 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 1078 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592237651667600