Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq4327 158 1e-33 >seq4327 Length=1153 Score = 158 bits (174), Expect = 1e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 101250 TTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTC 101309 ||||| || || ||||| | ||| || |||||||| || || || || | | |||| Sbjct 505 TTAAATATATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTC 564 Query 101310 TGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTT 101369 | |||| || ||||| || || || || || || | |||||||| || ||||| |||| Sbjct 565 TTCCATCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTT 624 Query 101370 CTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAG 101429 |||||||||| |||||| ||| ||| |||| | || ||||| | ||| || ||||||| Sbjct 625 CTTTATCTTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAG 684 Query 101430 TGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| |||||||| ||||||||||| || ||||| Sbjct 685 TGATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCAT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396226771116330