Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq252 122 2e-22 seq222 104 5e-17 >seq252 Length=6430 Score = 122 bits (134), Expect = 2e-22 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 133933 TATTCTAACTGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTG 133992 |||| || |||||||||||| || ||||| ||||| | || || || |||||| Sbjct 5314 TATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATAT 5255 Query 133993 CTTTAGTCAATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTG 134052 || ||||||| | || ||| || || |||||||||||| | |||||| | || Sbjct 5254 TTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAAAGATCTTG 5195 Query 134053 TGATCTA-TTCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGT 134111 |||| || |||| || || |||||||| |||||||| ||||| || | || ||||| Sbjct 5194 TGATTTAGGTCTT-GGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGA 5136 Query 134112 TAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCA 134169 |||||||||| ||| ||| || | ||| ||| | ||| || | ||| ||| ||| Sbjct 5135 TAGCACAAGTATGTAATTTACAACCAGCTGAATTTATACATGTATTG--GGAAATGCTCA 5078 Query 134170 CATTTATAAAAATCACGTAGAA 134191 ||||||| ||||| || ||| Sbjct 5077 TGTTTATAATAATCATGTTGAA 5056 >seq222 Length=6725 Score = 104 bits (114), Expect = 5e-17 Identities = 262/387 (68%), Gaps = 15/387 (4%) Strand=Plus/Minus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||| | || || |||||||||||||||||| ||| ||||| ||||| || | || Sbjct 3228 TTATTAGGGGATCCAGGTGTTGGTAAAACAGCAATAGTTGAAGGATTGGCTATAAAAATT 3169 Query 150458 GCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGG 150515 | | || ||||| || ||||| || ||| | | |||| | ||||||| ||||| Sbjct 3168 GTACAAGGAGATGTACCTGATTC-ATTAAA-AGGAAGAAAGTTAGTTTCTTTAGATATGT 3111 Query 150516 GTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTT 150573 | |||| | ||||||| |||| ||| | ||||| || ||||||||| || | | |||| Sbjct 3110 CTTCATTAATTGCTGGTGCTAAATATAGAGGTGATTTTGAAGAACGTTTAAAATCTATTT 3051 Query 150574 GCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATAC 150630 || ||||| | | || || | | || || |||| || ||||| || ||||| Sbjct 3050 --TAAAAGAAATTCAGGATTCAGAGGGACAAGTAGTTATGTTTATTGATGAGATACATAC 2993 Query 150631 TATTATGGGTGCTGGTGCGACTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAAC 150689 || | ||||||||||| | | || | ||| | || ||| | ||||| ||||||| Sbjct 2992 GGTTGTTGGTGCTGGTGC-AGTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAAC 2934 Query 150690 CTGCTCTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATCGT 150748 | ||| | | || ||| | | ||| ||||||||||| || ||||||| | Sbjct 2933 CACTACTAGCCAGAGGAGAATTAAGATGT-ATCGGTGCAACTACTGTTAGTGAATATAGA 2875 Query 150749 AAACACATTGAAAAAGATGCAGCACTA 150775 | || ||||||||| |||| || Sbjct 2874 CAGTTTATAGAAAAAGATAAAGCATTA 2848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147433219563620