Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2587 215 3e-50 seq1362 194 1e-43 seq632 154 1e-31 seq7187 150 1e-30 seq5486 136 3e-26 seq1621 136 3e-26 seq2525 129 4e-24 seq304 129 4e-24 seq4327 114 8e-20 seq76 109 4e-18 seq3125 105 4e-17 seq3686 86.0 4e-11 >seq2587 Length=1884 Score = 215 bits (238), Expect = 3e-50 Identities = 720/1095 (66%), Gaps = 58/1095 (5%) Strand=Plus/Plus Query 591844 TAAAGTACTTCTTGAATAAATATTTTCGGTAAATGGTTCAATACATTCATTATATCCTTT 591903 |||| || ||| ||||||| || ||| ||||||||| ||||||||| |||| Sbjct 816 TAAAACACGTCTGTAATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAA 875 Query 591904 AATTTGAGATGTACTTGCTGTTGGCATACATG-TAGTAGTTAAACTGTTTCTAACACCAT 591962 |||||| || || |||||||||||| || || || | | ||||| | || | Sbjct 876 AATTTGTGACGTTGAAGCTGTTGGCATAGGTGCTAAAAGA-AGAGAATTTCTTAATCCGT 934 Query 591963 ATATCATTATCTGTTCCCGAAGAGTTTTCCAATCCCACATTCCACTTAATTTATCTTCAC 592022 | | |||| | || | | ||||||||| || | ||| |||||| | Sbjct 935 GTTTACTTATTTTTTTTTTTAATAAATCCCAATCCCA-AT---ATTTA--TTATCTACTT 988 Query 592023 CAAGATTCCATAAATCAAACTGGAATTTACCTT---TTGAAAGTGGACTTCCCCAAAAGG 592079 |||||| | |||||| || ||| | |||| ||| |||||| || | | | Sbjct 989 TTGCATTCCACATATCAAATTGTAATATTCCTTGGCTTGC---TGGACTACCTTGATATG 1045 Query 592080 TTTCATATGGACCAGATTCTTTGGCCATTTGTAATGA---TTCTGTCATTGTTCCAAAAT 592136 ||||||||| ||| | ||| |||| || | || |||| | | || ||| Sbjct 1046 ATTCATATGGTCCACTTACTTGTGCCAATTCAACAGACATTTCT---AAAGCAGCATAAT 1102 Query 592137 ATATAGTTTCAAATATTTTCCTATTAAGATCTCGAGCAATATCAGAATCAAATGGA-ATT 592195 | ||||||||||||||| | ||||| | ||| ||| ||||| ||| ||||| || Sbjct 1103 ACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATTCATATGGATATC 1162 Query 592196 TTAAATATAGCAAACAC--ATCGGCTAATCCTTGTACACCAACGCCAATAGGTCTATGGC 592253 ||||| |||| | | ||| |||||||||||||| || | |||||||||||||| | Sbjct 1163 TTAAA---AGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTC 1219 Query 592254 GTAAATTTGAAACACGTGTTTTTTCTACTGGATAATAATTTACATCAATAATATTATTTA 592313 | |||||| | || || ||||||||||||||| |||||||| |||| || Sbjct 1220 TTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTA 1279 Query 592314 AATTTCTTGTAATAATTCTTGCGACCTTGTACAATTTATTATAATCAAACTCTGGAACAC 592373 ||||||| ||||||||| | | | | || ||||| ||| ||| ||| ||| Sbjct 1280 AATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTT---- 1335 Query 592374 CGTTTTCATGAATAATAAATTTAGGTAAACAAATTGATGACAAATTACAAACTGCATATT 592433 ||||| | || |||||| ||| ||| || | ||||||||||| || || Sbjct 1336 --TTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTACTT 1393 Query 592434 CATCTGCAGATGAGAATTCTACAATTTCACAACAAAGATTTGAGCCATTAATTACGCCTA 592493 |||| | |||| |||| | |||||||||||| ||| || |||||| |||| Sbjct 1394 CATCAGGTGATGTATATTCAATAATTTCACAACATTAATTACTGCATTTAATTGTTCCTA 1453 Query 592494 TATTAATCTGATTTGATTTTTGATTGATAGCATCTTTAAACAATATGTATGGTACACCTG 592553 ||| | ||||| ||||| ||| ||||||||| | || || ||||||||||| | Sbjct 1454 AATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAG 1513 Query 592554 TTTCAATTTGTGTTTCCATTATTTTAAA-CCATAAATCTCTTGC----TTTGATTTGTTT 592608 |||| ||||| ||| | ||| ||| |||||||||| ||| ||| ||| ||| Sbjct 1514 TTTCTATTTGGCTTTGTAATATAGCAAACCCATAAATCTTGTGCAAGAATTGTTTTTTTT 1573 Query 592609 TATAA-ATCTACCCTCATTTTCATATTTAAGATA-AGCTTTATTAAATTCTTCACCATAT 592666 || || | || | ||| ||||| ||| | ||| | |||||||||||| | Sbjct 1574 CCCAAGATTT----TCTTCTTCGTATTTTGTATATAATTTTTTCAAATTCTTCACCCCAG 1629 Query 592667 TTTCCTACAATATCTGGACATT-GTGATGGACACATAAGTGACCAATTTTCATCTTTTTC 592725 || | | ||||||||| || | || ||| | | ||| || | || || | Sbjct 1630 GTTTCACTTAAGCCTGGACATTCGTTAGGGCACCATTAAAGTCCAGTTCTTATTTTCCTT 1689 Query 592726 AACAC-GATCCATGAAAATATTA-TTAATCATTAAT-CCAAGGAATAAATCTCTGGCTCT 592782 || | | ||| || | || | || || ||| || |||||||| | ||||| Sbjct 1690 TACTCTTTTTCATAAATAAATCAGGTACCCA--AATAGCATAAAATAAATCACGAGCTCT 1747 Query 592783 ---TTCCGTTTCAGCACCAGTATTTTTCTTTAGATCAAGGAAGAAAAATATATCACCATG 592839 ||| ||| |||| |||||| ||| ||| | || ||| ||||| ||| Sbjct 1748 CAATTC---TTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATG 1804 Query 592840 CCAAGGTTCAATAAATACCGCAAATGAACCAGCTCTTTT--ACCACCTTGATTCGCATAT 592897 ||| ||||||| | |||| ||||| ||| | |||||| |||||||||| ||||| Sbjct 1805 CCATGGTTCAACATATACAGCAAAAGAA-CTTTTCTTTTCCTCCACCTTGATCTACATAT 1863 Query 592898 CTGGCTATGTCATTA 592912 || ||| | | |||| Sbjct 1864 CTTGCTGTATAATTA 1878 >seq1362 Length=3065 Score = 194 bits (214), Expect = 1e-43 Identities = 377/542 (70%), Gaps = 31/542 (6%) Strand=Plus/Plus Query 295795 GATGGACCTCCATTTGCTACAGGA--ACTATGCATTATGGACATATTTTAGTCTCAACTA 295852 |||||||| ||||||||||| ||| || | |||||||| ||| | |||| || | Sbjct 1618 GATGGACCACCATTTGCTACTGGATTACCA--CATTATGGGCATTTATTAGCAGGAATAA 1675 Query 295853 TTAAAGATACCATGACTAGATATTT--AACAATGAATGGTTATCAAGTTAATATGGGAAT 295910 | |||||| | ||||||||||| | |||| ||| ||| ||| | | || | Sbjct 1676 TAAAAGATTGTGTAACTAGATATTTTTATCAATC--TGGATATTCAGTAGAAAGACGATT 1733 Query 295911 TGGTTGGGATTGCCATGGAGTTCCAATTGAA-ATGT--TGGCTaaaaaaaCTATCGGATA 295967 |||||||||||| |||||| | || ||||| ||| | | ||| ||| || ||| Sbjct 1734 TGGTTGGGATTGTCATGGATTACCTGTTGAATATGAAATAGAGAAAGAAAATA----ATA 1789 Query 295968 T-ATCACAAAGAAAGATTTATTGGAATACGGTATTGATCGTCATAATGATATTTGTCGTG 296026 | | || || ||||| |||| || || || ||| ||||||| | ||| | Sbjct 1790 TTAACAAGAAAGAAGATATATTAAAAATGGGAATAGATGTATATAATGAAAAATGTAGAA 1849 Query 296027 ATATGGTATTAAAATGTACTGATAAATGGT---ATTCTGATTTTGAGAGAATTGGAAGAT 296083 ||| || ||||||| | || || ||||| || | | |||| ||||||||||||| Sbjct 1850 GTATAGTTTTAAAATATTCTAATGAATGGGTAAATACCG---TTGAAAGAATTGGAAGAT 1906 Query 296084 GGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAATCTGTTATTT 296143 ||||||| || | ||||| |||||||| ||||||||||||||||||||| |||| | Sbjct 1907 GGATTGACTTTGAAAATGATTATAAAACTATGGATAAAAATTTTATGGAAAGTGTTTGGT 1966 Query 296144 GGTCATTTAAACAACTTTATGAAAAGGAAAT--GATTTTTGAAGGTTATAAAGTTATGCC 296201 || |||| ||| | ||| |||| |||| |||| | || | |||||||||||| Sbjct 1967 GGATCTTTAGTCAATTATATAAAAA--AAATTATATTTATAAATCATTTAAAGTTATGCC 2024 Query 296202 TTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAATTATAAAGA 296261 ||||| | || |||||||| |||| ||||||| ||| |||||||||||| Sbjct 2025 ATATTCATGTAAATGTAATACACCTATATCAAATTTTGAATTAAATTTAAATTATAAAGA 2084 Query 296262 GATTATTGATCCATCTGTTACTTGTTGTTTTGAAATTATTTCTACAGAATTTT-CTAttt 296320 || ||||||| ||||| |||| | || | || || |||| | |||| ||||| Sbjct 2085 TGTTTCTGATCCAAGTGTTA-TTGTAGGATTTA---TACTTTTACAAACTTTTCCTATTA 2140 Query 296321 tt 296322 || Sbjct 2141 TT 2142 >seq632 Length=4523 Score = 154 bits (170), Expect = 1e-31 Identities = 354/522 (68%), Gaps = 36/522 (7%) Strand=Plus/Plus Query 894955 ATTGCTGATTTATTTGCAAAAATGAATaaaaaaaTGGATTCTGATCTTGATAAAATAAAA 895014 |||||||||| ||||| || | ||||| |||||| | ||| | ||||||||||| Sbjct 3172 ATTGCTGATTGGTTTGCTCAACTTAATAATAAAATGTCTGGAGATTTAAATAAAATAAAA 3231 Query 895015 GATGTAGGTTTATATTTCATTGAAGTTTTTAAAGCATGTGGTATTAATATGTCTGAAA-- 895072 | || || |||||| |||||||| | ||| |||||||| |||||| |||| Sbjct 3232 AAGGTTGGACAATATTTTATTGAAGTATGGAAAAGTTGTGGTATGAATATG---GAAAAT 3288 Query 895073 ---CAAAGTTTATTTGGTCAAGTGATTTATTTAATAAAAATCCTGAAAAATATTTTACAA 895129 ||| ||||| ||| | |||||| | | |||||||| || || ||||||| | | Sbjct 3289 GTTCAA--TTTATGTGGGCTAGTGATGAAATAAATAAAAACCCAGATAAATATTGGTCGA 3346 Query 895130 GATTGTTAGATATTTCCGAAGAAACCT--CTCTTTCCAGGAGTAAAAGATGTTGTCAAAT 895187 | | | ||||| || ||| | | | || | | ||||||||||| || Sbjct 3347 CAGTTATTGATATATC--AAGGAGTTTTAATATTAATCGAATTAAAAGATGTTTAACTAT 3404 Query 895188 TATGGGTCGAAAAGACGGAGATG--AATTATCTGTTTCTCAAATTATTTATCCTTGCATG 895245 |||||||||| || ||||| | ||||| ||| |||||||||| | || || || ||| Sbjct 3405 AATGGGTCGAACTGAAGGAGAAGATAATTA-CTG-TTCTCAAATTTTATACCCATGTATG 3462 Query 895246 CAAGTTGCAGATATTTTTGAACTCGAACCTGAAGGAATAGATATTTGTCAATTAGGTGTT 895305 ||| |||||||||||| || | || | | ||||||||||||||||| | Sbjct 3463 CAATGTGCAGATATTTT----CT---TTTTAAATG--TCGATATTTGTCAATTAGGGACT 3513 Query 895306 GATCAACGTAAAGTTAATATGCTCGCTCTCGAATA---TGCCAAGAAAAATGGATTAAAA 895362 |||||| | ||||| |||||||| ||| ||||| || | ||||| | |||| Sbjct 3514 GATCAAAGAAAAGTAAATATGCTAGCTAGAGAATATTGTGATATAAAAAAAATAAAAAAA 3573 Query 895363 GTACCTGTTATACTATCACACCATATGTTAATGGG---ATTAGGTGGACCTAAAAATAAA 895419 ||||||||| |||| || ||| || || ||||| |||| || | ||| Sbjct 3574 AAACCTGTTATTTTATCTCATGGAATGCTACCAGGTTTATTAGAGGGAC---AAGAAAAA 3630 Query 895420 ATGAGTAAATCCGATCCTAAATCGGCTATATTTATGGAAGAT 895461 ||| || |||||| || || || || |||||||| ||| Sbjct 3631 ATGTCAAAGTCCGATGAAAACTCTGCAATTTTTATGGATGAT 3672 >seq7187 Length=700 Score = 150 bits (166), Expect = 1e-30 Identities = 243/344 (71%), Gaps = 13/344 (4%) Strand=Plus/Minus Query 475595 ACAAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTT 475654 ||||| || ||||||||||| | | |||| | |||||| |||| | ||||| ||| Sbjct 333 ACAAGAGCCAAATTTGAAGAATTAAATGATGATTTATTTAGAGAAACTTTAGAACCTGTT 274 Query 475655 GAACAAGTTCTCAGA-GATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGT 475713 || |||| | ||| ||| | ||| ||| ||| || || ||||||||||| | || Sbjct 273 AAAAAAGTATT-AGATGATGCAAAATATGAAAAAAGCAAAATCGATGAAATTGTTTTAGT 215 Query 475714 AGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAA 475773 |||||||||||| | || || ||||| | |||| || | | ||| |||||||| Sbjct 214 AGGAGGTTCAACTCGTATACCTAAAATTCAACAAATTATTAAAGAGTTTTTCAATGGTAA 155 Query 475774 AAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGC 475833 | | |||| | || | || || |||||||| || |||||||| |||||| | ||||| Sbjct 154 AGAACCAAATAGAGGTATTAACCCAGATGAAGCCGTAGCATATGGTGCTGCTATTCAAGC 95 Query 475834 AGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTT-GACGTAA 475892 | |||| | | ||| ||| | || || | || ||||| ||||| || || | Sbjct 94 TGGTATTATTTTAGG------AGAAG---AATTACAAGATGTTGTA-TTGTTAGATGTTA 45 Query 475893 CTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 ||||| | | |||||| ||||||| ||||| || ||||||||| Sbjct 44 CTCCATTAACTTTAGGTATTGAAACTGTTGGTGGTATTATGACT 1 >seq5486 Length=935 Score = 136 bits (150), Expect = 3e-26 Identities = 383/581 (66%), Gaps = 58/581 (10%) Strand=Plus/Plus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 ||||||||||| || | ||||||||||||||| ||||||||||| |||| | ||| Sbjct 35 GATTGGTGTATAAGTAGGAATAGATATTGGGGAACCCCAATTCCAATATGGACAGATGAA 94 Query 297172 GATGGTGAAG-AAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAAT 297230 | | || || |||||||||| || | | || ||||| || || || || | Sbjct 95 AA-GATGGAGCAAATAATTTGCATAGAAAGTATAAAACAATTAGAAAAACTTAGTGGTGT 153 Query 297231 TGATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAA 297290 | |||||| | ||||||||||| |||| |||||||| |||| ||| | || || Sbjct 154 TACTAATATCACTGATTTACATAGACATAATATTGATCATATAACTATTGATGATCCTAG 213 Query 297291 AGG-AAAAGGCATG-----TTATCTCGTGTTACCGGTGTTTTAGATTGTTGGTTTGAATC 297344 ||| |||| || ||| | | | | ||||| |||||||||||||| Sbjct 214 AGGTAAAAATTATCCAAAATTAAAAAGAATATCTGAAGTTTTTGATTGTTGGTTTGAGAG 273 Query 297345 AGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTTGAA---------------AATTC 297389 ||||||||||| |||| | | | || | || ||| | ||||| Sbjct 274 TGGTTCTATGCCATATGCTAAGGTGCACTTCCCATTTTATTGCTCCGACAATGCCAATTC 333 Query 297390 CGAAAT-----TTTAGACACTTCACA-----AGATT-------ATATT----GCAGATTT 297428 |||||| | | | | | | | || || ||||| || ||||| Sbjct 334 CGAAATCGATATCTCCAAAGTCCCAATGGAAAGTTTTAATAAAATATTTCCAGCTGATTT 393 Query 297429 TATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTAC 297488 ||| ||||| | |||||||||||||||||||| |||||||| ||||| || ||| Sbjct 394 TATTGCAGAAGGGTTAGATCAAACAAGAGGTTGGTTCTATACTTTGCTAGTTATTAGTAC 453 Query 297489 AGCTATATTTAACAAACCAGCATTTAAAAATGTAA-TTGTTACAG-GAATTGTTAACGCA 297546 | | ||| | || || ||||||||||| ||| |||| || | | | ||| ||| Sbjct 454 ATTACTTTTTGATAAGGCACCATTTAAAAATTTAATTTGTAACGGTTTAATATTA--GCA 511 Query 297547 GCTGATGGACAAAAAAT--GTCAAAAAGTAAAGGTAATTATCCTGATCCAA---ATATTT 297601 ||||||| ||||||| || | | | |||| |||||||| || |||| |||| | Sbjct 512 TCTGATGGTAAAAAAATGAGTAAGAGATTAAA--AAATTATCCCGACCCAATATATATAT 569 Query 297602 TGATGGATAAATATGGTGCAGATACTTTACGTCTTTATTTA 297642 | | |||||||||| ||||||| ||||||| | ||| || Sbjct 570 TAA---ATAAATATGGAGCAGATAGTTTACGTTTATATCTA 607 >seq1621 Length=2725 Score = 136 bits (150), Expect = 3e-26 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 318643 ATACCATTATCACCATAAACACATTGAATCAATTTATCATTAGCATTTCTTACAGTACCA 318702 || |||| |||||||| | | ||||||| | | | ||| | ||||||||| || | | Sbjct 1620 ATTCCATCTTCACCATATAAAAATTGAATAATATCACCATATGAATTTCTTACTGTTCTA 1679 Query 318703 TCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCTTTGTACATAACCTGTG 318762 ||||| | || ||| |||||| | ||||| |||| ||||||||| |||||| || Sbjct 1680 TCATACTGTACCATAACATCTTCCATAGCTTTAATTAATCTTCTTTGTATATAACCAGTT 1739 Query 318763 TCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGCCATAACTTGGAAAAAG 318822 |||| |||||| |||||||| ||||||||||||||| ||| ||||| | || |||||| Sbjct 1740 TCTGATGTTTTACAAGCAGTATCAATAATACCTTCTCTACCTCCCATAGCATGAAAAAAG 1799 Query 318823 AATTC 318827 | ||| Sbjct 1800 ACTTC 1804 >seq2525 Length=1925 Score = 129 bits (142), Expect = 4e-24 Identities = 217/312 (70%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 475961 ATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACC 476020 |||||| ||||||||| |||||||||| ||| | ||||||||||| || | Sbjct 1925 ATCCCAACCAAAAAATCTCAAGTATTTTCAACTGCAGCAGATAATCAAACTCAAGTCAGT 1866 Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 ||| || | ||| |||| |||||| || | | || ||||| | || || | ||| Sbjct 1865 ATCAAAGTATTTCAAGGAGAAAGAGAAATGGCCTGTGACAATAAAATGCTAGGTTCATTT 1806 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 || | | ||||| || || || || ||||| ||||| ||||||||||| || |||||| Sbjct 1805 GATTTGGTTGGTATACCACCAGCCCCAAGAGGTGTTCCACAAATTGAAGTCACATTTGAT 1746 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAA 476200 | |||||||||| ||| ||||| || | ||| |||||| | || || | || Sbjct 1745 GTAGATGCAAATGCAATTATTAATATTTCAGCTATCGATAAAATGACAAATAAAAAACAA 1686 Query 476201 AATATAACTATTACAAACAATCGTGGTAGATTTACTGAAGAACAAATTCAACGTATGGTT 476260 | ||||||| | ||| | | ||||| | || | | ||||| |||| || |||||| Sbjct 1685 CAAATAACTA-TCCAA--AGTAGTGGTGGTTTGAGTAAAGAAGAAATCGAAAAAATGGTT 1629 Query 476261 GATGAAGCCAAA 476272 | |||||| || Sbjct 1628 CAAGAAGCCGAA 1617 >seq304 Length=6038 Score = 129 bits (142), Expect = 4e-24 Identities = 126/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 817094 TTAATAGATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCT 817153 || || |||||||| || |||||||||||||| ||||||||| |||| || || ||||| Sbjct 1577 TTGATTGATTTTTCTTCACCAAATATTGCAAAAGAAATGCATGTTGGTCATTTAAGATCA 1518 Query 817154 ACAATAATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGT-GAAGTACAAAG 817212 || ||| | || || || ||| | | ||| |||||||| | | || || ||| || Sbjct 1517 ACCATATTAGGAGATACTATTTCCAAAGTATTTGAATTTT-TAAAAGTAAAAACACATAG 1459 Query 817213 AATAAATCATATTGGTGATTGGGGAACACAATTTGGTATG 817252 | | |||||| ||||||||||||||||||||||||||||| Sbjct 1458 AGTCAATCATGTTGGTGATTGGGGAACACAATTTGGTATG 1419 >seq4327 Length=1153 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || ||||| |||||| | ||| |||||||| ||||| | | |||| Sbjct 546 TTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGT 605 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||||||||| || ||||| || ||| ||| ||| |||||| |||||| Sbjct 606 TGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATTTTCAATTGTATCA 665 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | ||||| || || ||||| ||||| | || || || || ||||| Sbjct 666 GATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTG 721 >seq76 Length=8655 Score = 109 bits (120), Expect = 4e-18 Identities = 337/508 (66%), Gaps = 30/508 (6%) Strand=Plus/Plus Query 361415 TTATTTGTATGTATTTCAAAAATCTTGATGCGACCTTCTTTAGAAGGTAAATCAATTTTA 361474 || |||||||| || | || || | || |||||||||||| ||||| |||| | Sbjct 6533 TTTTTTGTATGAATATTTAATATTTGAATTCGACCTTCTTTATTGGGTAATGATATTTCA 6592 Query 361475 ATATGAATTCCAAATCTTCCTGATCTTTTTACTGCTGGATCTAATAATTCTAATCTATTT 361534 ||||| | | |||||| |||| |||| | |||| ||| | ||| |||| ||| ||| Sbjct 6593 ATATGTAATTCAAATCGACCTGGTCTTAACAATGCTTCATCGATTAAATCTATTCTGTTT 6652 Query 361535 GTTATACCGATACAAATAAAATTA-TTAAATTGTTCTAAACCATCCATTTCTGCTAAAAA 361593 || ||||| || | | | |||| ||||| | || || ||||| |||| || ||| || Sbjct 6653 GTCATACCAATTAATAGTATATTATTTAAACTATT-TACTCCATCTATTTTTGATAATAA 6711 Query 361594 TTGATTTACAACAGAATCTCTTAC------TGGACT---TGAACTATTACCTTCTCTTGA 361644 |||||| || | | ||| |||| | ||| || | | |||| ||| ||| Sbjct 6712 TTGATTAACTATACTATCATTTACACCTGATCCACTAGATGCAGCACTACC-TCT-TTGT 6769 Query 361645 AGGTAACATGGCATCAATTTCATCAATTACTACCATATATGTAGGA--GATTTATCGCCA 361702 | || || ||||| || ||||| | || || | ||||||| | || || || ||| Sbjct 6770 CGACAA-ATTGCATCTATCTCATCTAATA-TAATA-ATATGTAATAATGAATTCTCTCCA 6826 Query 361703 TATTTTTTCCATGCATCTTTAGCGGCTTTAAAAATATCTCTAACATTTGATTCAGATTCT 361762 ||| || | | || ||| ||||||| | | | || |||| |||||||| Sbjct 6827 GATTGCTTATACTCCAATTCAGCCTCTTTAAATAAGTTACGAATATTTTCTTCAGATTGA 6886 Query 361763 CCAACGTATTTATTAAAAATTTCTGGTCCTGACATTAATCTAAATTGATCACCTTCACAA 361822 || ||||| ||||| || ||||| || | |||| || |||| | ||| | Sbjct 6887 CCTACGTACTTATTTAATATTTCAGGCC----CATTGAT---AATT--TTCGGTTCTCTT 6937 Query 361823 CCAAGTAA---TTTTCCTAAATTACGTGCAACTGATGTTTTTCCTGTCCCAGGAGGACCA 361879 || ||| ||| |||| | | || | | ||||||| || || |||||||||||| Sbjct 6938 GCATTTAATGTTTTACCTATTTGTCTAGCTATTAATGTTTTCCCGGTACCAGGAGGACCA 6997 Query 361880 TAGAAAATAATACCTTTTACTGGTTTTA 361907 || || || ||||| || || |||||| Sbjct 6998 TATAATATCATACCCTTCACATGTTTTA 7025 >seq3125 Length=1586 Score = 105 bits (116), Expect = 4e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 |||||||| |||||||| ||||||||||||||||| | ||| | ||||||| | ||| Sbjct 1244 ATTGGTATCGATTTAGGTACTACTTACAGTTGTGTTGGTGTATTTAAAAATGGAAGAGTT 1303 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 |||||| | |||||| |||||| | | || ||||||||||| || ||| ||| Sbjct 1304 GAAATATTAAACAATGATTTAGGTAACCGTATTACTCCATCATATGTATCATTTGTTGAT 1363 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||| |||| || || ||||||| ||||| | | | || | | ||| Sbjct 1364 GGAGAAAGGAAAGTTGGTGAAGCAGCTAAATTAGAAGCTACTTTACACCCAACTCAAACT 1423 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATA 474554 | ||||||| ||| ||| | || ||| | || |||||||||| Sbjct 1424 GTATTTGATGTTAAGAGACTTATAGGTAGGAAATTTGATGATA 1466 >seq3686 Length=1345 Score = 86.0 bits (94), Expect = 4e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 594894 TTGAAAAATAGACTAAAAGAATCTGTTGTACATGAAATAATAGATGAAGCAATTCAAATT 594953 ||| |||||| | || |||| ||||| || | ||| | | |||||| || || | Sbjct 596 TTGGAAAATAAATTACCAGAAGAGGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTA 537 Query 594954 GAA-GATGAATTTATTAATGATTCTCTTCCATGCAGATTACTTGGAATGAATTCCCAACT 595012 ||| ||| | |||||| ||| ||| | || || ||| ||||||||||||| ||| Sbjct 536 GAAAGATCA-TTTATTTGTGAATCTTTACCTTGTGATTTAATTGGAATGAATTCAAGACT 478 Query 595013 AATGTCACAATATATTAAATATGTTGCGGATAGATTATTAG 595053 ||||| ||||| ||| ||| |||||| ||| ||||||||| Sbjct 477 TATGTCTCAATACATTGAATTTGTTGCTGATCGATTATTAG 437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267720654032120