Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2587 199 2e-46 seq9906 127 1e-24 >seq2587 Length=1884 Score = 199 bits (220), Expect = 2e-46 Identities = 170/206 (83%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 25915 ATTTTGCTCAACT-TTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 ||||| || ||| || | |||||||||||| || | ||| || |||||||||||||| | Sbjct 1681 ATTTTCCTTTACTCTTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCAC 1740 Query 25974 TCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTG 26033 ||||||| ||||||||| || ||||| ||| ||| |||||| || ||||||||||||| Sbjct 1741 GAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTG 1800 Query 26034 AGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTA 26093 | ||||||||||| | ||| | ||||||| | |||||| |||||||||||||||||||| Sbjct 1801 AATGCCATGGTTCAACATATACAGCAAAA-GAACTTTTC-TTTTCCTCCACCTTGATCTA 1858 Query 26094 CGTATCTTGCAGTTTCATTGAAAACT 26119 | |||||||| || | ||| |||||| Sbjct 1859 CATATCTTGCTGTATAATTAAAAACT 1884 Score = 159 bits (176), Expect = 2e-34 Identities = 465/700 (66%), Gaps = 36/700 (5%) Strand=Plus/Plus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 |||||||||| |||||||||||||||| ||||| || || || ||||||||||| || Sbjct 848 ATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGGTG 907 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || || | |||| || | || ||||||| |||||||| Sbjct 908 CTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCAAT 967 Query 25179 CTAAA---TTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC-- 25233 | || ||||||||| ||| | | | || || |||||||||||| | ||| Sbjct 968 CCCAATATTTATTATCT-ACT---TTTGCATTCCACAT--ATCAAATTGTAATATTCCTT 1021 Query 25234 -ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTT 25292 ||||||| | ||||| | | | |||| || || | ||||| || Sbjct 1022 GGCTTGCTGGACTACCTTGAT---ATGATTCATATGGTCCACTTACTTGTGCCAATTCAA 1078 Query 25293 TTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAG 25352 || ||||| ||||||||||||||| ||||||| || | | ||||| |||| Sbjct 1079 CAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAG 1138 Query 25353 CTTTTTCTCCATCGAAAGCAATTTCCATTAAGGC--GAACGTATCTGCTAATCCCTGAAC 25410 ||| ||| || | | | | | | || || || |||||||||||||| || || Sbjct 1139 CTTCTTCAGATTCATATGGA--TATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTAC 1196 Query 25411 TCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAA 25470 ||||| ||||| || | |||| | ||||| | | || | |||| |||||| | Sbjct 1197 TCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATA 1256 Query 25471 ATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTC 25530 |||| | || || | ||||||| ||| | || | | ||| ||| | || | Sbjct 1257 ATTTCTTTCAATAATTTTATCTAAATT-TCTA-GTAATAATTTTAGTAATATC---ATAT 1311 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 ||| | ||| ||| || ||| | ||||| | |||||||| |||| || || Sbjct 1312 AATTTTTTAAAATTAA----ATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 1367 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATAC 25649 || |||||||||||||||||| ||| || || | | ||||||| | || || || Sbjct 1368 GGAAGCTAAATTACAAACAGCTACTTC-ATCAGGTGATGTATATTCAATAATTTCACAAC 1426 Query 25650 ATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT--ATTGCATGTATTGACA-A 25706 || | || || |||| ||| ||| |||| |||||||| ||| | | | ||| Sbjct 1427 ATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATT---TAGAATTACATG 1483 Query 25707 TATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTG 25746 |||||||||| | |||||| || ||||| ||||| Sbjct 1484 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTG 1523 >seq9906 Length=546 Score = 127 bits (140), Expect = 1e-24 Identities = 251/362 (69%), Gaps = 11/362 (3%) Strand=Plus/Minus Query 26182 TCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT- 26240 ||||||||| || || | ||| || || || || ||| ||| |||||| | Sbjct 489 TCTAATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTG 430 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAG 26300 || || ||| || || || |||| ||| |||| ||||||| ||||||||| || | Sbjct 429 CTTTAA-TGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATG 371 Query 26301 AAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAAT 26360 |||| | ||| | | |||||| |||||||||||||| || |||||||||||| ||| Sbjct 370 AAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAAT 311 Query 26361 ATCCT--TCAC-TCAAAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAA 26417 || | | || | ||| || ||||||||| | | | | || | || | || | Sbjct 310 ATTTTTGTGACATTAAA--TG-ATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTA 254 Query 26418 CTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCAT 26477 | | |||| | ||| | | | || ||||| |||||||| | ||||| | || Sbjct 253 TTCCTATAGATACTCTCATTAATAAATGCTGAGGACGTTCAATAATTTTATTAT--TAAT 196 Query 26478 CTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTC 26537 |||| || ||||| ||||||| ||||| |||||||||||||||| ||||||||||| Sbjct 195 ACGTAAT-AAGTAAGACCTTTCTAATGTTTTAAATCCAAAATAATCATAATTGAAATCTC 137 Query 26538 TT 26539 || Sbjct 136 TT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253007032841750