Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq376 161 1e-34 >seq376 Length=5534 Score = 161 bits (178), Expect = 1e-34 Identities = 485/735 (66%), Gaps = 24/735 (3%) Strand=Plus/Plus Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856 ||||||||||||| ||| | |||||| | |||||| | || || | ||||||||| Sbjct 1371 ATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATATACATAATCT 1430 Query 47857 CTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGCT 47914 | ||||| ||||| || | || || ||| | |||||||| ||||| |||||| || Sbjct 1431 TTTGCATGACCCCAATCTCTAAATGTATCGATATTTCCTA-ATATAATAACAGT-GTGAA 1488 Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || | | ||| | || | ||||||| || || ||||| |||||||||| Sbjct 1489 TTTTTTTAAATATTTTTGCTATACCCTTTGTAATTTTTTTTGTAACAAATGTTTCACCAC 1548 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTCA 48033 |||||||| |||||||||||| | |||||| |||| | |||| |||| ||| Sbjct 1549 GTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGCTTCT 1607 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| ||| | ||| | |||||| | |||||||| || |||| Sbjct 1608 CTATAATTTTTTGTTATATAGTGACTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 1667 Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149 | || ||||| | || | || | || || | |||||||| | |||| Sbjct 1668 TTAAACGGTGTATTTTCATTTTG-ACATTCGGTTTGAATAGTATTACCATATAATTCAGA 1726 Query 48150 GGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 || || || | || | || || ||| || |||| || | ||| || | Sbjct 1727 TGTTGAAGCATTATAAAATTTGA----TATTATCAATCTTTGATAATTTAATTGCTTCTA 1782 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACG 48265 | ||||| || || || | |||| || | ||||| || || | ||||| Sbjct 1783 ATATTCTCAACGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAAGC 1839 Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325 || ||||||||||| ||||| | | |||||| || |||| ||||| | | | Sbjct 1840 TTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATA 1899 Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCAT 48385 | | | || ||| || || ||| || |||||||| || ||||||| ||| Sbjct 1900 TTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAA 1959 Query 48386 AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCT 48445 | || ||||| ||||| | |||||||| | | | || | | | |||||||| | Sbjct 1960 ATATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTT 2019 Query 48446 CATACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCA 48504 |||| || ||||| | ||| ||||| ||| || ||||| ||||| |||||||| |||||| Sbjct 2020 CATATCCTTTTTCTAAAAGTAGTTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCA 2078 Query 48505 GTGATTAAAGCAACT 48519 |||| |||||| Sbjct 2079 AATATTAGTGCAACT 2093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665405473310800