Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2587 136 5e-27 >seq2587 Length=1884 Score = 136 bits (150), Expect = 5e-27 Identities = 451/690 (65%), Gaps = 11/690 (2%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| ||||| || || ||||| Sbjct 1517 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAATCAAAAA 1458 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || || ||| || |||||| | || || ||| Sbjct 1457 AATTTAGGAACAATTAAATGCAGTAATTAATGTTGTGAAATTATTGAATATACATCACCT 1398 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGA 76083 ||||| |||||||| ||||| || || || || | | |||| | ||| || ||| Sbjct 1397 GATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATT-TGTTGATAGAGA 1339 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| | Sbjct 1338 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 1279 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGC 76202 | | | | ||||| ||||||| |||||| ||| | ||| ||||| || |||| Sbjct 1278 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCG-GAAAGATCAAATAAAA 1220 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||| ||||||||||| | || || ||||| | || ||| |||||| | | | | Sbjct 1219 GACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGAT 1160 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 | ||| ||| || || ||||| || || | ||| | || |||||||| |||||| Sbjct 1159 ATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATT 1100 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | || | | || | | ||||||||| ||| || | ||||| ||| | Sbjct 1099 ATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATC 1040 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AG 76441 | ||| ||| || |||||| | | || |||||||||| |||| | ||| | | Sbjct 1039 AAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGAT 981 Query 76442 CTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAA 76497 || || || |||||| || | || || | ||| | | | || | | || Sbjct 980 AATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAAGTAAACACGGATTAAGAAA 922 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 |||| | | ||||| ||||||||||| || || ||||||| || || |||||||| Sbjct 921 TTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAATAATGA 862 Query 76558 ATGCTTTGAACCATACACAACAAACATCTA 76587 || |||||||||||| |||| ||||| || Sbjct 861 ATCCTTTGAACCATATACAAGTAACATTTA 832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489883387200