Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4327 150 2e-31 seq2587 136 5e-27 seq7187 125 9e-24 seq3125 87.8 2e-12 >seq4327 Length=1153 Score = 150 bits (166), Expect = 2e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| ||||| | || |||||||| ||||| || || ||||| | || Sbjct 724 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCT 665 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||||| || || |||||||| ||||| ||||| || ||||| Sbjct 664 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 605 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||| || | ||||| ||||| ||||| | ||||||||| | || | |||| || ||| Sbjct 604 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAAC 545 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 ||||||| ||||| || |||| Sbjct 544 ATTCAAAAAGAGTCAACCTTACA 522 >seq2587 Length=1884 Score = 136 bits (150), Expect = 5e-27 Identities = 659/1025 (64%), Gaps = 30/1025 (3%) Strand=Plus/Minus Query 78539 GGGGAAGAATTCGAAAAA-TTGTACACTAAATACGAAGAGGAAGGTC-TCGCTATTAAGA 78596 || |||||||| |||||| || || || ||||||||||| ||| || | | | || | Sbjct 1625 GGTGAAGAATTTGAAAAAATTATATACAAAATACGAAGAAGAAAATCTTGGGAAAAAAAA 1566 Query 78597 CAATTGATGCATCTGAACTAT-GGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACC 78655 ||||| |||| || ||| || ||||| | |||| |||| ||| || || Sbjct 1565 CAATTCTTGCACAAGATTTATGGGTTTGCTATATTACAAAGCCAAATAGAAACTGGTGTA 1506 Query 78656 CCGTATATGCTATACAAAGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTC 78715 || |||||| |||| ||||| ||||| || || || ||||| || |||| Sbjct 1505 CCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAATCAAAAAAATTTAGGAACA 1446 Query 78716 ATCAAAAGCTCTAACCTTTGCACAGAAATTCTGGAATACACGGATAA--GAATGAAACAG 78773 || ||| || ||| || |||||| | ||||| || || | ||||| || Sbjct 1445 ATTAAATGCAGTAATTAATGTTGTGAAATTATTGAATATAC--ATCACCTGATGAAGTAG 1388 Query 78774 CTGTATGTAATCTAGGGTCTATCGCTCTACCAAAGTTTGTTGATCGAGAATTAAAGACAT 78833 |||| |||||| ||| || || || || || ||||||||| ||||| ||| || Sbjct 1387 CTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATTTGTTGATAGAGAAAAAAAAGAAT 1328 Query 78834 TTGATTATTCAAAGCTCCACGAAATTACAAAAATCGTAACTAAAAATTTAAATCGTGTAA 78893 || ||| | ||| | | || ||||| ||||| | |||| ||||||| || | | Sbjct 1327 TTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTTAGATAAAATTA 1268 Query 78894 TTGACCGTAACTACTACCCAGTCGAGACTGCTAAATATTCTAATATGAAACATAGACCAA 78953 |||| | || || || ||||| | || || || |||| | ||||||||| | Sbjct 1267 TTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAATAAAAGACATAGACCTA 1208 Query 78954 TTGGTCTAGGTGTTCAAGGATTGGCAGATGTATTCA-ACTTGTGTGGTCTTCCCTTCGAT 79012 |||| |||| || |||||||| |||||| ||| | ||| | | | ||| | || Sbjct 1207 TTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGAT-ATCCATATGAA 1149 Query 79013 TGCGAAGATTC-AAGGACTATGAATGCTCATATTTTCGAGACTATTTATCATGCAGCTTT 79071 | ||||| | || || | | ||| || || || ||||| ||| |||| ||||| Sbjct 1148 TCTGAAGAAGCTAAAGAAT-TAAATAGAAGAATATTTGAAACTATGTATTATGCTGCTTT 1090 Query 79072 AGAA--GCAAGTTCAGAACTTGCTGAAATTAATGGGCCTTATGAGAGTTTCGAGGGTTCA 79129 |||| | ||| ||| | || || | | ||| || ||||| | | ||| Sbjct 1089 AGAAATGTCTGTT--GAATTGGCACAAGTAAGTGGACCATATGAATCATATCAAGGTAGT 1032 Query 79130 CCCGCTTCACAAGGTCTTCTTCAACCAGATCTATGGGAAGGTGAAGCTAAATACAGTGGT 79189 || || ||||| | | ||| ||| | | |||| | || || || | | Sbjct 1031 CCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGAT--AATAAA 975 Query 79190 CGTTACGATTGGGATGCAATGAGAAAGCGTGTAATGACGAAGGGTCTGAGAAACAGTCTT 79249 || ||||||||| | | | ||| ||| | | || | ||||| |||| Sbjct 974 TATTGGGATTGGGATTTATTAAAAAAAAAAATAAGTAAACACGGATTAAGAAATTCTCTT 915 Query 79250 CTCGTAGCACCAATGCCCACTGCTTCGACGGCTCAGATCCTCGGTAATAATGAGTGTTTT 79309 || ||||||| ||||| || ||||| ||| | || || | || |||||||| | ||| Sbjct 914 CTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAATAATGAATCCTTT 855 Query 79310 GAACCATACACTACAAACATATATCTTCGTCGCACATTAGCTGGTGAATTTGTTGTGGTT 79369 |||||||| || | ||||| ||| | || ||| ||||||||| |||| ||| Sbjct 854 GAACCATATACAAGTAACATTTATTACAGACGTGTTTTAAGTGGTGAATTCTTTGTTGTT 795 Query 79370 AACAAACATCTTGTT-GAAGAT-TTGAAGA-AGTTAGGTCTTTGGTCAAAAGAGATGA-- 79424 || ||| ||||| ||||| || || || |||||||||| |||| |||| Sbjct 794 AATCCTCAT-TTGTTAAAAGATCTTTTTGATAG--AGGTCTTTGGGATGAAGATATGAAA 738 Query 79425 -AAGACTTAATGGTCAAAGCCGGAGGGAGTGTGCAAAACATAGTAGAGATACCAGATAAT 79483 || | ||||| | | | ||| ||||| ||| | || || ||||| | | Sbjct 737 CAACAATTAATTGCCCATAATGGA---AGTGTTCAATATATTAGCGAAATACCTAGTGAC 681 Query 79484 ATTAAAAATCTTTATAAGACTGTTTGGGAAATTAGCCAAAAATGTATTATCGACATGGCA 79543 | ||| | | ||||| || ||||||||||| | |||||| |||||| || ||||| Sbjct 680 TTGAAAGAGTTGTATAAAACCGTTTGGGAAATCAAACAAAAAAATATTATTGATATGGCT 621 Query 79544 GCGGA 79548 || || Sbjct 620 GCTGA 616 >seq7187 Length=700 Score = 125 bits (138), Expect = 9e-24 Identities = 228/331 (69%), Gaps = 11/331 (3%) Strand=Plus/Minus Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 |||||||| ||||| |||||| ||||| | | | ||||||||| || ||||| | Sbjct 321 TTTGAAGAATTAAATGATGATTTATTTAGAGAAACTTTAGAACCTGTTAAAAAAGTATTA 262 Query 196250 CGTGACGCAAAG-ATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAAC 196308 ||| ||||| ||| | || | || | ||||||||||| | || ||||| ||||| Sbjct 261 GATGATGCAAAATATGAAAAAAGCAAAA-TCGATGAAATTGTTTTAGTAGGAGGTTCAAC 203 Query 196309 CCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAA 196368 ||||| || || |||||||| || || || |||||| |||||| ||| | Sbjct 202 TCGTATACCTAAAATTCAACAAATTATTAAAGAGTTTTTCAATGGTAAAGAACCAAATAG 143 Query 196369 AACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTC 196428 | || ||||| |||||||| || || |||||||| || |||| |||| |||| | | Sbjct 142 AGGTATTAACCCAGATGAAGCCGTAGCATATGGTGCTGCTATTCAAGCTGGTATTATTTT 83 Query 196429 AGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCT 196488 || || || ||| | |||||| || | | | |||||| | || || | | Sbjct 82 AG-----GAGAAGAAT----TACAAGATGTTGTATTGTTAGATGTTACTCCATTAACTTT 32 Query 196489 GGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 ||| ||||||| | |||||| |||||||| Sbjct 31 AGGTATTGAAACTGTTGGTGGTATTATGACT 1 >seq3125 Length=1586 Score = 87.8 bits (96), Expect = 2e-12 Identities = 172/249 (69%), Gaps = 8/249 (3%) Strand=Plus/Plus Query 195301 TATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGT 195360 |||||||||||||||||| ||||||||| ||||||||||||| |||||| | || Sbjct 1243 TATTGGTATCGATTTAGGTACTACTTACAGTTGTGTTGGTGTATTTAAAAATGGAAGAGT 1302 Query 195361 AGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGA 195420 || || | ||||| ||| ||||||| |||||||| || || | ||| || Sbjct 1303 TGAAATATTAAACAATGATTTAGGTAACCGTATTACTCCATCATATGTATCATTTGTTGA 1362 Query 195421 TAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTA---TGAACCCTA-TCA 195476 | ||| | ||||| || || || |||| ||| ||||| | |||| | ||| Sbjct 1363 TGGAGAAAGGAAAGTTGGTGAAGCAGC--TAAATTAGA-AGCTACTTTACACCCAACTCA 1419 Query 195477 ATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAG 195536 | ||||| ||||| | ||| | ||||| ||| | || ||| ||||| ||||| | Sbjct 1420 A-ACTGTATTTGATGTTAAGAGACTTATAGGTAGGAAATTTGATGATAAAGAAGTCGTAA 1478 Query 195537 ACGATATAA 195545 | |||| || Sbjct 1479 AAGATAGAA 1487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657774493136800