Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4327 208 1e-48 >seq4327 Length=1153 Score = 208 bits (230), Expect = 1e-48 Identities = 197/250 (79%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | |||||| ||| |||||||| ||||| ||||| ||| || Sbjct 515 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTC 574 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| || ||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 575 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 634 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| ||||| || | ||||| || ||||| || ||||| Sbjct 635 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 694 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA---GTAAAA--TAATTATTTTAA 193385 || |||| ||||||||||| ||||||||||| || |||||| ||| || ||| | Sbjct 695 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTAAAAAGTAAATAATTTGA 754 Query 193386 ATAATATATA 193395 | || ||||| Sbjct 755 AAAAAATATA 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899534183680800