Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3686 282 8e-71 seq4327 183 6e-41 >seq3686 Length=1345 Score = 282 bits (312), Expect = 8e-71 Identities = 548/801 (68%), Gaps = 22/801 (3%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 365 CTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAG 423 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||||| ||||| ||||| | | Sbjct 424 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTT 483 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 484 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 543 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatattt-aatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || || | | | Sbjct 544 ACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCT- 602 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| |||||| || ||||| || || || ||| || |||||||| Sbjct 603 ---ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATT 659 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| ||||||||||| ||||| Sbjct 660 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAAC 718 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | ||| | | Sbjct 719 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGA 776 Query 49990 ATT--TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTAT 50047 || |||||| |||||| || ||||| |||||| ||||| || | ||||| Sbjct 777 GTTCGTATCAT---TTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTAT 833 Query 50048 ATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNAT 50107 |||||| ||||| | |||||| | | | || | || Sbjct 834 ATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAAT 893 Query 50108 TAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTG 50167 ||||||| ||| ||||||| |||| | ||| | |||||||||||| | |||||| | Sbjct 894 TAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTT 953 Query 50168 TCTTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 | | ||||| | || || ||||| || ||| | ||||||| || |||| | Sbjct 954 TTTGGCTTC-AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTA 1012 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 | |||||| ||||| || ||||||| || | ||| ||||||||||||||||| | | Sbjct 1013 TTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACAT 1072 Query 50287 TTAAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 || |||||| | ||| ||||| ||| |||||||||||| |||||| |||||||| Sbjct 1073 TT-AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1130 Query 50345 TGATGCTACGGATTTTTTATA 50365 ||| || | | ||||||||| Sbjct 1131 TGAGGCCTCAGCTTTTTTATA 1151 >seq4327 Length=1153 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| || ||||| ||||||||||||| | |||| Sbjct 512 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 571 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| Sbjct 572 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 631 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | ||| || | ||| || || ||||| || || Sbjct 632 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 691 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 692 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984345160081500