Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq3686 266 6e-66 seq4327 168 1e-36 seq8161 100 5e-16 seq3553 93.3 8e-14 >seq3686 Length=1345 Score = 266 bits (294), Expect = 6e-66 Identities = 571/848 (67%), Gaps = 26/848 (3%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 320 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 379 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 380 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAACCTAAACATTCT 438 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||||| ||||| |||| | | ||||||| || | | Sbjct 439 AATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATT 498 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| | Sbjct 499 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 558 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | || || |||||||| || || | | | ||| | |||||| Sbjct 559 ATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCT----ATAAATTAAACA 614 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| || ||||| ||||| || ||| || |||||||||||||| ||||| || Sbjct 615 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 674 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || | | ||||||| ||||||||||| |||||| | | ||| |||| Sbjct 675 ATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATA 733 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAA 39304 | || || ||||| ||| |||| |||||| | ||| | | || |||||| | Sbjct 734 TTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGAGTTCGTATCATTT-- 789 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| || ||||| |||||| ||||| || | ||||||||||| ||||| | Sbjct 790 -ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATG 848 Query 39365 AAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 |||||| || || | ||| Sbjct 849 AAATAAATTTAAT--CTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAG 906 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||||| |||| | ||| | |||||||||||| | |||||| | | ||||| | Sbjct 907 GTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTC-AAT 965 Query 39483 TA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 || || ||||| || ||| | ||||||| || |||| || |||||| || Sbjct 966 TATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGC 1025 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 ||| || ||||||| |||| ||| ||||||||||||||||| | ||| |||||| | | Sbjct 1026 TGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTT-AATTTTTCAA 1084 Query 39602 AG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || ||||| ||| |||||||||||| |||||| |||||||| || || | | | Sbjct 1085 AGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1143 Query 39660 TTTTTATA 39667 |||||||| Sbjct 1144 TTTTTATA 1151 >seq4327 Length=1153 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||| ||||| || ||||| | || | | || Sbjct 512 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 571 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 572 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 631 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| || ||||| || | ||| || || ||||| || || Sbjct 632 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 691 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 692 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 727 >seq8161 Length=638 Score = 100 bits (110), Expect = 5e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 485 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 426 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 425 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAACCTAAACATTCT 367 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||||| ||||| |||| | | ||||||| || | | Sbjct 366 AATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATT 307 Query 39009 AATTTAAATGGTAA 39022 || | | | ||||| Sbjct 306 AAATCACAAGGTAA 293 >seq3553 Length=1395 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 1231 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 1290 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 1291 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAACCTAAACATTCT 1349 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACAT 38986 ||||||| ||| || |||||||||| ||||| |||| Sbjct 1350 AATAATCGATCAGCAACAAATTCAATGTATTGAGACAT 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905015051202000