Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9906 123 7e-23 seq252 122 3e-22 seq2009 113 1e-19 seq1126 84.2 6e-11 >seq9906 Length=546 Score = 123 bits (136), Expect = 7e-23 Identities = 200/288 (69%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || |||| ||||| || | || |||||||| || |||||| || |||||||| || | Sbjct 437 GCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAA 378 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 |||| ||| | ||| |||| ||||||||| | || |||| |||||| || |||||| Sbjct 377 AAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGA 318 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCG 156395 ||||||| || | ||||| ||| || || || | ||| ||||||| | Sbjct 317 GTAAAATATTTTTGTGACATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATA 258 Query 156396 TGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCA 156455 || || | ||||| || ||||| | | |||||||||||| || | ||| || | Sbjct 257 TGTATTCCTATAGATACTCTCATTAATAAATGCTGAGGACGTTCAATAATTTTATTATTA 198 Query 156456 ATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCA 156503 || || | | ||| | | ||| | |||||||| || ||||||||| Sbjct 197 ATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATCCAAAATAATCA 150 >seq252 Length=6430 Score = 122 bits (134), Expect = 3e-22 Identities = 274/404 (68%), Gaps = 21/404 (5%) Strand=Plus/Minus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 || |||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 5532 AACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTT 5473 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| ||||| | ||||| |||||||||||||| ||||| || ||| || Sbjct 5472 CATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCT 5413 Query 381082 GATTATGATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| | | | || || |||||||| | ||| ||||| || ||||||||| |||| Sbjct 5412 GAATAT-ACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATAT 5354 Query 381141 CATAGACC-AGCTAAAAA--ATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGC 381197 ||| | | |||||| |||| ||| | | | ||| | ||| | ||| Sbjct 5353 TATAAATTTAATTAAAAACGATCCG---ACATGTA------GACGAATTATTTTATGTGC 5303 Query 381198 GTGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAG 381255 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || Sbjct 5302 ATGGAATG--TAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 5245 Query 381256 TTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTT 381315 || |||||| | ||| || ||| ||| | | ||||| | ||||| | Sbjct 5244 TTTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAAAGATCTTGTGATTTA 5188 Query 381316 GGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 5187 GGTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTAC 5144 >seq2009 Length=2334 Score = 113 bits (124), Expect = 1e-19 Identities = 321/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| |||| |||||| || Sbjct 2187 CTATCAAATCTTCCTGGTCTTGTAATAGCGGGATCTAAAATATCGACTCTATTTGTTCCT 2128 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || || || | Sbjct 2127 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCAACAAGCATCT 2070 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 2069 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTTGATCTTT 2010 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 || | ||||||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 2009 TTCGT-CCAACAGCATCAATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 1951 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 |||||||| |||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 1950 TGTGCAAATAGTTCTCTAACTCTTGATGGTCCGATTCCCACAAATACTTCAATAAAATCA 1891 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 1890 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCACCAGCAACAGCTTTTGCTAATA 1833 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 || || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 1832 AAGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 1774 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| |||||| | || | || ||||| || |||| ||| || ||| | |||| Sbjct 1773 AATACTTGATATTTTGCTGGATTTTTCAAAAAATCAACAAACTCCATAATTTCTTCTTTT 1714 Query 289321 GC 289322 || Sbjct 1713 GC 1712 >seq1126 Length=3440 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 745 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 803 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 804 AAACCCACATGGATCATT 821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471616011582530