Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq252 127 3e-24 seq5459 105 8e-18 >seq252 Length=6430 Score = 127 bits (140), Expect = 3e-24 Identities = 317/470 (67%), Gaps = 25/470 (5%) Strand=Plus/Minus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 172588 ||| ||||| |||||||| |||||||||||||| || || ||| |||||| || | Sbjct 5458 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 5400 Query 172589 TG-ATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC 172647 || || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 5399 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATAAATTTAA 5343 Query 172648 ---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAAC 172701 ||||| | || | ||||| | || || || || || ||||||||| | Sbjct 5342 TTAAAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATT 5286 Query 172702 TTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCA--Gaaaaaa 172759 | ||| |||||| | |||||||| |||| |||| ||||||||||| || || Sbjct 5285 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 5226 Query 172760 aTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTA 172819 | ||| | ||| | ||||||||||| ||||||||| | || || || | Sbjct 5225 AATTATCATGTATTATG-----TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATT 5171 Query 172820 TAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACT 172877 ||||||| | ||||| || |||| ||| | || || || || |||||| Sbjct 5170 CAATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAA 5113 Query 172878 CCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCT 172937 |||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| Sbjct 5112 CCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGC 5053 Query 172938 TTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172987 ||||| || || ||||| |||| ||| ||| |||| || | | ||||||| Sbjct 5052 TTAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 5003 >seq5459 Length=938 Score = 105 bits (116), Expect = 8e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194586 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 194645 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 26 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 85 Query 194646 GCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTGGTCGTT 194704 ||||| |||||| || | |||||| ||||| ||||||||| || | | Sbjct 86 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 144 Query 194705 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 194764 | || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 145 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 204 Query 194765 CTACTCAATTCTTAAATGAA 194784 || || || | ||||| ||| Sbjct 205 CTGCTAAAATGTTAAAGGAA 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632405083577200