Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq4327 150 1e-31 >seq4327 Length=1153 Score = 150 bits (166), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||||||||||||||| || | | || | ||| || Sbjct 516 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 575 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 576 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 635 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | |||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 636 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 695 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT--AAAACGTA 29797 || ||||| ||||| ||||| || |||||||| ||||||| Sbjct 696 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTA 737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385169011957290