Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq252 120 4e-22 seq5459 111 2e-19 seq6062 82.4 1e-10 seq3964 82.4 1e-10 >seq252 Length=6430 Score = 120 bits (132), Expect = 4e-22 Identities = 311/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Minus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || | Sbjct 5458 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 5400 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | ||||| | | |||| || || || |||| | | ||||||| | Sbjct 5399 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTA 5340 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | ||| ||||| | |||| |||| || || || || ||| ||||| | | | | Sbjct 5339 AAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTTAG 5283 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAAA 168887 || |||||| | || |||||||| | |||| ||||||||||| | | |||| Sbjct 5282 ATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAAT 5223 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| | |||||||||||| ||||||||| | || || || | Sbjct 5222 T--ATCATGTATTAT-----GTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 5170 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | ||||| | || ||| | || || || |||||||| || Sbjct 5169 AATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCA 5110 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | ||||| ||| || ||| ||| ||| || ||| || ||||||||| ||| Sbjct 5109 GCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTA 5050 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || || || || || |||| ||| ||| |||| || | | ||||||| Sbjct 5049 AAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 5003 >seq5459 Length=938 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 26 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 85 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| |||| | |||| ||||| ||||||||| || | | Sbjct 86 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 144 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||||||||||||||||||||||| | ||| ||||| || |||||| Sbjct 145 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 204 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 205 CTGCTAAAATGTTAAAGGAA 224 >seq6062 Length=850 Score = 82.4 bits (90), Expect = 1e-10 Identities = 149/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Plus Query 51838 AAGTTGGAGACTTGGTTAAAAGACA-ATTGATGGATGGTGATGATGTACTATTAAATAGG 51896 || |||| || | || ||||||| ||| || |||||||| |||| |||| ||||| Sbjct 83 AAATTGGTGATATAGTAGAAAGACATATTTGTG-ATGGTGATATTGTATTATTTAATAGA 141 Query 51897 CAACCAAC---ACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTA 51953 |||||| | || || || | |||| || ||||| | | || | | || Sbjct 142 CAACCATCTTTACATCGTATGTCAATTATGT---GTCATAAAGCTCGAGTT-ATGGATTA 197 Query 51954 -AAAACATTTAA----AATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATG 52008 ||||||||| ||||||| || |||| || |||||||||| |||||||||| Sbjct 198 TAAAACATTTCGCTTTAATGAATGTG--TATG--TAGTCCATATAATGCAGATTTTGATG 253 Query 52009 GGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||||||||||||||||| |||||| Sbjct 254 GGGATGAAATGAATTTACATGTACCTCAA 282 >seq3964 Length=1254 Score = 82.4 bits (90), Expect = 1e-10 Identities = 149/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Minus Query 51838 AAGTTGGAGACTTGGTTAAAAGACA-ATTGATGGATGGTGATGATGTACTATTAAATAGG 51896 || |||| || | || ||||||| ||| || |||||||| |||| |||| ||||| Sbjct 931 AAATTGGTGATATAGTAGAAAGACATATTTGTG-ATGGTGATATTGTATTATTTAATAGA 873 Query 51897 CAACCAAC---ACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTA 51953 |||||| | || || || | |||| || ||||| | | || | | || Sbjct 872 CAACCATCTTTACATCGTATGTCAATTATGT---GTCATAAAGCTCGAGTT-ATGGATTA 817 Query 51954 -AAAACATTTAA----AATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATG 52008 ||||||||| ||||||| || |||| || |||||||||| |||||||||| Sbjct 816 TAAAACATTTCGCTTTAATGAATGTG--TATG--TAGTCCATATAATGCAGATTTTGATG 761 Query 52009 GGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||||||||||||||||| |||||| Sbjct 760 GGGATGAAATGAATTTACATGTACCTCAA 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635092724393200