Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq252 109 7e-19 seq5459 107 3e-18 seq1134 96.9 5e-15 seq3518 89.7 7e-13 >seq252 Length=6430 Score = 109 bits (120), Expect = 7e-19 Identities = 422/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Minus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 5654 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTAAGA 5599 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| || ||||| | || | || ||||||| ||| ||| Sbjct 5598 GGTATCATTGAAGAGTTGCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 5539 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | || | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 5538 GAAAAAAACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 5479 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| ||| ||||| |||||||| |||||||||||||| || Sbjct 5478 TT--ATTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACT 5421 Query 180594 CAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||||| || | || || | | |||| | ||||| | || || ||| Sbjct 5420 TTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTA 5362 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | ||||| | || ||||| |||| ||| || |||| || || | Sbjct 5361 AAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCA 5302 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 5301 TGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTT 5242 Query 180773 TATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||||| || ||| |||| | ||| |||||||||||||| ||||||| Sbjct 5241 TATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTTAG 5187 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| |||||||||| |||||| || ||| ||| || | | | || Sbjct 5186 GTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 5128 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | ||||||| || || || ||| |||||| ||| Sbjct 5127 GT-ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAA 5069 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| |||||| | || |||| |||| ||||| Sbjct 5068 TAATCATGTTGAAAGCTTAAAAGTCCAGTTAAATAGAACACCCT 5025 >seq5459 Length=938 Score = 107 bits (118), Expect = 3e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 26 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 85 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 86 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 144 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| |||||||||||||||||||||| ||||||||| Sbjct 145 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTAT 190 >seq1134 Length=3426 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| || || ||| | |||||| ||||||||||| | || ||| | ||||||||| Sbjct 2652 TAAAGTCGCGCAGCTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 2593 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||| || |||| Sbjct 2592 ATCATTACAACAAACTATTATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAA 2533 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || || ||||| ||| || ||||||| |||| ||||| ||||| ||| || | || Sbjct 2532 TTTTCTAGAACCCTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAGGATGCATCAGC 2473 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | | || || |||||||| ||| | Sbjct 2472 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAA-GTATATTTAATGAATTTG 2414 Query 173127 ATGACCCTATTTTAA 173141 | || || ||||||| Sbjct 2413 ACGATCCAATTTTAA 2399 >seq3518 Length=1411 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/170 (73%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 201076 TAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCTA 201131 || ||||||| ||||||||| | || ||||| | | |||||| || | | || Sbjct 747 TATATTATCCACAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTTA 691 Query 201132 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAAT 201191 || || | || ||| || |||||||||||||||||| ||||| || ||||||||| Sbjct 690 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAAT 632 Query 201192 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||||||||| | || | ||| || |||| ||||| | || ||||| Sbjct 631 CAAGAAGATAGTTTGATCATGAATCAATCATCCATTGATCGGGGGTTATT 582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655192438210000