Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq252 123 3e-23 seq5459 102 1e-16 seq6062 82.4 1e-10 seq3964 82.4 1e-10 >seq252 Length=6430 Score = 123 bits (136), Expect = 3e-23 Identities = 314/469 (67%), Gaps = 23/469 (5%) Strand=Plus/Minus Query 171741 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 171800 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || Sbjct 5458 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGATAT 5399 Query 171801 TTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC- 171859 || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 5398 GCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATAAATTTAAT 5342 Query 171860 --AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAACT 171914 ||||| | || | ||||| | || || || || || ||||||||| | | Sbjct 5341 TAAAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTT 5285 Query 171915 TGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCA--Gaaaaaaa 171972 ||| |||||| | |||||||| || | |||| ||||||||||| || ||| Sbjct 5284 AGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAA 5225 Query 171973 TCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTAT 172032 ||| | ||| | ||||||||||| ||||||||| | || || || | Sbjct 5224 ATTATCATGTATTATG-----TATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 5170 Query 172033 AATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACTC 172090 ||||||| | ||||| || |||| ||| | || || || || |||||| | Sbjct 5169 AATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAAC 5112 Query 172091 CAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCTT 172150 ||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| | Sbjct 5111 CAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCT 5052 Query 172151 TAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172199 |||| || || ||||| |||| ||| ||| |||| || | | ||||||| Sbjct 5051 TAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 5003 >seq5459 Length=938 Score = 102 bits (112), Expect = 1e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193343 TAAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAAT 193402 |||||| |||||||| ||||| | ||| || | | ||||| ||||| | |||||||| Sbjct 26 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 85 Query 193403 GCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTGGTCGTT 193461 ||||| |||||| || | | |||| ||||| ||||||||| || | | Sbjct 86 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAGGAAGAT 144 Query 193462 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTG 193521 | || ||| ||||||||||||||||||||||||| ||| ||||| || ||||| Sbjct 145 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 204 Query 193522 CTACTCAATTCTTAAATGAA 193541 || || || | ||||| ||| Sbjct 205 CTGCTAAAATGTTAAAGGAA 224 >seq6062 Length=850 Score = 82.4 bits (90), Expect = 1e-10 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 233 CATATAATGCAGATTTTGATGGGGATGAAATGAATTTACATGTACCTCAA 282 >seq3964 Length=1254 Score = 82.4 bits (90), Expect = 1e-10 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 50438 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAA 50487 |||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 781 CATATAATGCAGATTTTGATGGGGATGAAATGAATTTACATGTACCTCAA 732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628447212518400