Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq7187 208 6e-48 seq2525 118 8e-21 seq9906 109 4e-18 seq3125 109 4e-18 seq304 107 1e-17 seq651 98.7 7e-15 seq4058 91.5 1e-12 seq1621 89.7 4e-12 seq154 86.0 5e-11 >seq7187 Length=700 Score = 208 bits (230), Expect = 6e-48 Identities = 485/717 (68%), Gaps = 31/717 (4%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||||||||||| | ||||| | ||| | || | ||||| ||||| | | ||| Sbjct 2 GTCATAATACCACCAACAGTTTCAATACCTAAAGTTAATGGAGTAACATCTAACAATACA 61 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | || ||| || | || |||| | |||||||||||||||||| Sbjct 62 ACATCTTGTAATTCTTCT---------CCTAAAATAATACCAGCTTGAATAGCAGCACCA 112 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||| || |||||||| || |||| | | |||| ||| ||||||||||||||| | | Sbjct 113 TATGCTACGGCTTCATCTGGGTTAATACCTCTATTTGGTTCTTTACCATTGAAAAACTCT 172 Query 281843 GAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGC 281902 || || |||| | ||||| ||||||| ||| ||||| ||||| |||||||||| | Sbjct 173 TTAATAATTTGTTGAATTTTAGGTATACGAGTTGAACCTCCTACTAAAACAATTTCAT-C 231 Query 281903 ACCTGTGATTTATCCA-GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | || ||| | || ||||| ||| ||| ||||||| ||| ||||| | | | Sbjct 232 GATTTTGCTTTTTTCATATTTTGCATCATCTAATACTTTTTTAACAGGTTCTAAAGTTTC 291 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 |||||| || || | | |||||| ||||| ||||| || | || | | | | Sbjct 292 TCTAAATAAATCATCATTTAATTCTTCAAATTTGGCTCTTGTTAATGTTTCTGAAAAGTT 351 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGT-TTGAGTCGAAGAA--GATAGTGC 282078 | |||||| | | | |||| |||||| | || |||||| ||| || |||| Sbjct 352 ATGTCCTTCAACTATATCTTCAATTTCAAT--TTGTGTTGAGT-GAACAACTGATAAGTT 408 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGAT-TC 282136 | ||| ||| |||| | || | |||| | || | | ||| || | || |||| | Sbjct 409 TCTTTTTGCAATTTCAACTTCTTTTCTTAATTTTTGAATAGCTCTT--TTATCTGATCTA 466 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATT--AT 282194 | |||| | |||| |||| | || || || | | | || | || || || || Sbjct 467 AGATCTATATTATTTTTTTTTTTAAACATTTTTATAAA--ATAGTCCATAACTCTTTGAT 524 Query 282195 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 282254 |||||||||||||||| || | |||||| |||| || || |||| || | |||| Sbjct 525 CAAAATCTTCACCTCCTAAGTGAGTATTACCTGCTGTTGCATAGACTTCAAATACACCAT 584 Query 282255 CTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 282314 |||| | |||| || ||||||| || ||||| || | ||| ||| | || Sbjct 585 TATCAATAACTAAAATAGAAACATCAAAAGTACCACCTCCTAAATC--GTATACTAAAAT 642 Query 282315 TCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || || |||| |||||||| | |||||| || ||||||||||| || |||| Sbjct 643 --ACTTGTT--TCTTCTTTTTTATCTAAACCATAAGCTAAAGCAGCAGCGGTGGGTT 695 >seq2525 Length=1925 Score = 118 bits (130), Expect = 8e-21 Identities = 252/370 (68%), Gaps = 6/370 (2%) Strand=Plus/Plus Query 281261 TAAT-TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTC 281319 |||| ||||| ||||||||| |||||| | |||||| | | |||| |||| Sbjct 1551 TAATGTTTCTGCTTCATTTTTTGAATCAGTTAAATTTTTTTTATGTTGATCTTTTTCTCT 1610 Query 281320 AAATTCTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT 281379 | | || |||||| || |||| | || |||| |||| | || | || | | | Sbjct 1611 ATTTAATTCGGCTTCTTGAACCATTTTTTCGATTTCTTCTTTACTCAAACCACCACTACT 1670 Query 281380 ATTAGTAATAGTAATATTCTTGGATTTG-TTTGTTGATTTATCAGCGGCAGTCACATTAA 281438 || | ||||| || || ||| ||| ||||| |||||| || | | ||||| Sbjct 1671 -TTGG--ATAGTTAT-TTGTTGTTTTTTATTTGTCATTTTATCGATAGCTGAAATATTAA 1726 Query 281439 GAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAG 281498 ||| |||| ||||| | ||||||||||||||||||||| || || ||||| | || | Sbjct 1727 TAATTGCATTTGCATCTACATCAAATGTGACTTCAATTTGTGGAACACCTCTTGGGGCTG 1786 Query 281499 GTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTT 281558 |||| || || |||||| ||||| || || | ||||| || | | || || || Sbjct 1787 GTGGTATACCAACCAAATCAAATGAACCTAGCATTTTATTGTCACAGGCCATTTCTCTTT 1846 Query 281559 CACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTC 281618 | || | || | || |||| | ||| |||||||||||||| ||||| ||||||| Sbjct 1847 CTCCTTGAAATACTTTGATACTGACTTGAGTTTGATTATCTGCTGCAGTTGAAAATACTT 1906 Query 281619 TGGATTTTTT 281628 |||||||| Sbjct 1907 GAGATTTTTT 1916 >seq9906 Length=546 Score = 109 bits (120), Expect = 4e-18 Identities = 149/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 162977 TTTCGGATTCAGGACTCTAGAAAAATCTTATCTTAAAA-GAATCAACaaaaaaaTTGTTG 163035 ||| ||||| | || |||||| ||||| |||| | | || || || |||||| ||| Sbjct 156 TTTTGGATTTAAAACATTAGAAAGGTCTTA-CTTATTACGTATTAATAATAAAATTATTG 214 Query 163036 AACGTCCTCAACATTTATTTATGAGAGTAGCTATTACACTCCATTACAGGAAAAATGATC 163095 |||||||||| |||||||| ||||||||| |||| | | ||| | | |||||| Sbjct 215 AACGTCCTCAGCATTTATTAATGAGAGTATCTATAGGAATACAT------ATAGATGATC 268 Query 163096 TCGACAGGATATTTGAAACTTATAAATATTTATCTAAAGGATATTTTACTCACGCAACAC 163155 | || | | || ||||||||| | | | || || |||||||||||| || || | Sbjct 269 TTGAAAAGGCTTTAGAAACTTATCATTTAATGTCACAAAAATATTTTACTCATGCTACTC 328 Query 163156 CTACATTATTTAATGCTGGTACAACA 163181 |||||||||||||| | || ||| || Sbjct 329 CTACATTATTTAATTCGGGAACACCA 354 >seq3125 Length=1586 Score = 109 bits (120), Expect = 4e-18 Identities = 160/226 (71%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 282656 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACT 282715 |||| ||| | ||||| || | || || ||||||| | ||| | ||||| | | Sbjct 1464 TCATCAAATTTCCTACCTATAAGTCTCTTAACATCAAATACAGTTTGAGTTGGGTGTAAA 1405 Query 282716 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGT----AAATGAAAC 282771 | ||||| |||| ||||| || |||| | | || |||| | |||||| || Sbjct 1404 GTAGCTTCTAATTTAGCTGCTTCACCAAC----TTTCCTTTCTCCATCAACAAATGATAC 1349 Query 282772 ATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTG 282831 |||||||||||| | || |||||| |||||| | ||||||||| | ||||||| Sbjct 1348 ATATGATGGAGTAATACGGTTACCTAAATCATTGTTTAATATTTCAACTCTTCCATTTTT 1289 Query 282832 CCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATA 282877 ||||||| |||||||| |||| || |||||||| ||||||||| Sbjct 1288 AAATACACCAACACAACTGTAAGTAGTACCTAAATCGATACCAATA 1243 >seq304 Length=6038 Score = 107 bits (118), Expect = 1e-17 Identities = 126/168 (75%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 637116 GAAAAT-TATTG-TCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACAT 637173 |||||| ||||| | |||| |||||| ||||||||||| |||||||||||| |||| ||| Sbjct 1586 GAAAATGTATTGATTGATTTTTCTTCACCAAATATTGCAAAAGAAATGCATGTTGGTCAT 1527 Query 637174 TTAAGATCAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGAT 637233 ||||||||||| || | || || |||||| | ||||| ||| | | | | Sbjct 1526 TTAAGATCAACCATATTAGGAGATACTATTTCCAAAGTATTTGAATTTTTAAAAGTAAAA 1467 Query 637234 GTTTATCGTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATG 637281 || | | |||||||| |||||||||||||| ||||| |||||| Sbjct 1466 ACACATAGAGTCAATCATGTTGGTGATTGGGGAACACAATTTGGTATG 1419 >seq651 Length=4451 Score = 98.7 bits (108), Expect = 7e-15 Identities = 304/462 (66%), Gaps = 24/462 (5%) Strand=Plus/Plus Query 391787 CATTA-ATGATGTAATCAAAACA-ATTGAGACTTATGATATTACAACTATTAGAGCATCA 391844 ||||| ||||||| || | | || ||||| || |||||||| ||||||||| | ||||| Sbjct 3226 CATTACATGATGTTAT-ATACCACATTGAAACATATGATATAACAACTATTCGTGCATCT 3284 Query 391845 ACACCTCAATTCATTATGGCTAAATACATTCAAGAAAATACTGATATTAGAGTATTATTG 391904 |||||| | ||| | | | | || | ||| || | ||||| | | | || Sbjct 3285 ACACCTATGTATATTCTTTCAAGGTTAAT---AAAAAGTAGTTGTATTAAAATGGTTTTA 3341 Query 391905 TCAGGTGAAGGTTCTGATGAAATTCATGGCAGTTATAAATA----CATGAGATCAGCGCC 391960 |||||||| || |||||||| |||| | ||| ||| ||| | ||| || Sbjct 3342 AGTGGTGAAGGATCCGATGAAATATTTGGCGGATATTTATATTTTCATAA----AGCACC 3397 Query 391961 AAACAGTCAAGAATTTCATAAAGAA--ACTATTAGACTTTTGGAAGAACTTTATCTTTTT 392018 ||| |||| ||||| | |||| || | ||| | | || || || ||| | Sbjct 3398 AAATGCCGAAGAGTTTCACAGAGAATTACAA--AGAAAAATACATGATCTACATATTTAT 3455 Query 392019 GATAACAAAAGAACTGATAGA---ACAATGGCAGGAAACGGTTTAGAAGTACGTGTACCA 392075 ||| | | || | ||| | || ||||| ||| |||||| |||||||||| Sbjct 3456 GATGTCTTACGAGCAAATAAATCTACTATGGCTTTT---GGTATAGAAGCACGTGTACCA 3512 Query 392076 TTTCTTGATTTTAATTATGTCGATTTTATTATGAATATTGATCCCAATTTATTGATGTAT 392135 ||| | ||||| | | | | ||||| |||||||||| ||||| || | ||||| | Sbjct 3513 TTTTTAGATTTAGAATTTTTAGATTTAGTTATGAATATAGATCCAAAAGAAAAGATGTGT 3572 Query 392136 AAATCTGATTATATTGAAAAGAAAATTATTAGAGATGCTTTCAAAGGCTATTTGCCCGAA 392195 | || | |||||||| | ||| | ||| ||||| |||||||| || || Sbjct 3573 TCGAATAATAAAATTGAAAAAGATATTTTAAGAAGAGCTTTTGCTGGCTATTTACCTGAT 3632 Query 392196 AATATTCTTTACAGACCAAAAGAAGCTTTTTCTGATGCTGTT 392237 | ||||||||||||| ||| ||| ||||| |||| |||| Sbjct 3633 CACATTCTTTACAGACAAAAGGAACAATTTTCGGATGGTGTT 3674 >seq4058 Length=1225 Score = 91.5 bits (100), Expect = 1e-12 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 399307 AATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATATGGGTACCATCA 399366 ||| |||| || ||||| |||| || ||||||||| ||||||| ||||| ||| Sbjct 1218 AATGATGGAGAAGGTATACCAGTAGATATACATAAAGAAATGAATATATATGTACC-TCA 1160 Query 399367 -ATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAGGAAAAAACTGT 399425 ||||||||||| ||| | ||||| ||| |||||| ||| | || || | || Sbjct 1159 TATGATTTTTGGTGAATTATTAACATCTGATAATTATGATGATGCTGAAGACAGAATAAC 1100 Query 399426 TGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTTATTCTGTTGAATTTACTAT 399485 ||||||| ||||||||| || ||||| || | ||||||| | | ||||||||| | Sbjct 1099 AGGTGGTAGAAATGGTTTCGGAGCTAAACTAACAAATATTTTTAGTAAAGAATTTACTGT 1040 Query 399486 TGAA 399489 | || Sbjct 1039 TCAA 1036 >seq1621 Length=2725 Score = 89.7 bits (98), Expect = 4e-12 Identities = 209/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 435006 TGTAGAAGGAAAAAGAATTCAAATCAGATTCAATGGTAGAACACTTCCAATGTTCCCTAA 435065 ||| |||||||||||||||| | | |||| ||| |||| || | ||| || ||| Sbjct 1931 TGTGGAAGGAAAAAGAATTCCATTTGGATTTAATCATAGATCATTACCACATTTTATTAA 1872 Query 435066 ATTTGATGATAGTGCATTCTCCAGAGGTTTT-TGTCGTAATTCCTTTATCGAGGGTCTTG 435124 |||||| || | || ||||| ||| |||| ||||| | | | || | Sbjct 1871 ATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGTCA-AATTCTTATTTAAGTGGATTAA 1813 Query 435125 GACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTA 435184 || ||| | || || || | |||| ||| | |||||||||||| |||| ||| Sbjct 1812 CGCCACAAGAAGTCTTTTTTCATGCTATGGGAGGTAGAGAAGGTATTATTGATACTGCTT 1753 Query 435185 TTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTA 435244 |||||| | || ||||||||||| ||||||| | | | || | |||||| ||| Sbjct 1752 GTAAAACATCAGAAACTGGTTATATACAAAGAAGATTAATTAAAGCTATGGAAGATGTTA 1693 Query 435245 AACAAGAATATGATGGTACAGTGAGAAATGCAAATGGTAAACTTATATCATGTGTTTATG 435304 | | |||||| | ||||| |||||| || ||||| | |||| || | | |||| Sbjct 1692 TGGTACAGTATGATAGAACAGTAAGAAATTCATATGGTGATATTATTCAATTTTTATATG 1633 Query 435305 GTGATAATGGTAT 435317 |||| |||| || Sbjct 1632 GTGAAGATGGAAT 1620 >seq154 Length=7595 Score = 86.0 bits (94), Expect = 5e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 917174 ATTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATC-AATACTA 917232 |||| |||| |||||| |||||| | ||||||| || ||| ||||||||| ||||| Sbjct 6203 ATTCATTATCATGATGTGGAAATCTTAAATCGACACCTCCACTATGAATATCTAATACC- 6145 Query 917233 TTTCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGGT 917283 ||||||||| | || | ||| | ||| ||||||||||||||||| ||| Sbjct 6144 TTTCCTAATATGTTACTAGCCATAGTTGAACATTCAATATGCCAACCTGGT 6094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740105566175940