Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2587 167 6e-36 seq252 111 4e-19 seq6062 100 7e-16 seq3964 100 7e-16 seq1621 95.1 3e-14 seq9906 87.8 4e-12 seq6325 86.0 1e-11 >seq2587 Length=1884 Score = 167 bits (184), Expect = 6e-36 Identities = 325/469 (69%), Gaps = 16/469 (3%) Strand=Plus/Minus Query 110702 AGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT--AAGAGAAATGGCTCATTT 110759 ||| || || | || |||| |||||| |||||||||| || ||||| | || ||| Sbjct 1884 AGTTTTTAATTATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAGAAAAGT-TCTTTT 1826 Query 110760 GCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAAT 110819 ||| | ||| | ||||| |||||||||||||| |||||||| ||||| | | |||||| Sbjct 1825 GCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAAT 1766 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || |||||| ||||| ||||||||||||||||| || ||| | | |||||| Sbjct 1765 CATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTA 1706 Query 110880 TTCATG-AAACGTGTTCAAGAAAATGGCATGTGGTCTCTTAT-GTGTCCTCATCGTTCTC 110937 || ||| ||| | || | |||||| | ||| || | || ||| ||| | | || Sbjct 1705 TTTATGAAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGGTGCCCTAACGAATGTC 1646 Query 110938 CTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTT-TACGAAAAATATGAAAAA 110996 | || || ||| | || |||| |||||| | || || |||||| ||| || Sbjct 1645 CAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAAATTATATACAAAATACGAAGAA 1586 Query 110997 GAAGGCAAGTTTCGCAAACA----AATTCCAGCTCAAGAACT-TTGGTTCAAAATCCTTG 111051 ||| || || | ||| | ||||| || ||||| | | |||| || | Sbjct 1585 GAA---AATCTTGGGAAAAAAAACAATTCTTGCACAAGATTTATGGGTTTGCTATATTAC 1529 Query 111052 AATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGCAAA 111110 || ||| | |||||||| || ||||| || ||||||||| ||| |||| ||| Sbjct 1528 AAAGCCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCAT-GTAATTCTAAA 1470 Query 111111 TCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||||| ||||||||||||||||| | ||||||| || |||| Sbjct 1469 TCGAATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTAATGTTGTG 1421 Score = 109 bits (120), Expect = 1e-18 Identities = 475/746 (64%), Gaps = 69/746 (9%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || |||||| || || Sbjct 1301 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAA 1242 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || || ||||| | |||||||| ||||| || || |||||||||||||| Sbjct 1241 GAAGCGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCA 1182 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 1181 GATACATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGA 1122 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTaaa 112820 | || || ||||| || |||| |||||| | ||| | || || || Sbjct 1121 AGAATATTTGAAACTATGTATTATGCTGCTTT------------AGAAATGTCTGTTGAA 1074 Query 112821 aaagcagaaaaatcaaagaaaaCTGATTTGAA--ATTTCCAGGAGCTTATGATAGTTTCG 112878 ||| || ||| || || |||| || || ||| |||| | Sbjct 1073 TTGGCACAA----GTAAGTGGAC-CATATGAATCATATCAAGG---------TAGTCCAG 1028 Query 112879 AAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGAT-CAACAGCCTCTT 112937 | || || |||| ||| |||||||| | ||| || ||| || | Sbjct 1027 CAAGC------------CAAGGAATATTACAATTTGATATGTGGAATGCAAAAG----TA 984 Query 112938 GACAATGAACCAAAATAT---GATTGGAAAAATCTTAAAGATAGTGTTATG-AAACATGG 112993 || ||| |||||| |||||| | | ||||| | | || | ||||| || Sbjct 983 GATAAT------AAATATTGGGATTGG-GATTTATTAAAAAAAAAAATAAGTAAACACGG 931 Query 112994 AACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGG 113053 | | ||| ||||| || || ||||| ||||| |||||||| || |||| ||| | || Sbjct 930 ATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGG 871 Query 113054 TAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGG 113113 |||||||||| || || ||| ||||||||| |||||| | |||||||| || || Sbjct 870 AAATAATGAATCCTTTGAACCATATACAAGTAACATTTATTACAGACGTGTTTTAAGTGG 811 Query 113114 TGAGTTTGTACTTTGTAATAAAT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAAT 113169 ||| || |||||| | ||| || || | |||| ||| | | | ||| | Sbjct 810 TGAATT----CTTTGTTGTTAATCCTCATTTGTTAAAAGATCTTTTTGATAGAGGTCTTT 755 Query 113170 GGAACAATGAAGTGAAAAACTCCATT-ATTGCTAATCAAGGTTCGGTTCAACATCTAA-- 113226 || | | || ||||| | | ||| ||||| || | || |||||| || | | Sbjct 754 GGGATGAAGATATGAAACA-ACAATTAATTGCCCATAATGGAAGTGTTCAATATATTAGC 696 Query 113227 -AATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTC 113285 || | ||| | | ||||||| | | ||| || |||||||||| || ||| Sbjct 695 GAAATACCTAGTGACTTGAAAGAGTTGTATAAAACCGTTTGGGAAATCAAACAAAAAAAT 636 Query 113286 GTAATTGATATGGCTGCAGATCGTGG 113311 | |||||||||||||| |||||||| Sbjct 635 ATTATTGATATGGCTGCTGATCGTGG 610 >seq252 Length=6430 Score = 111 bits (122), Expect = 4e-19 Identities = 274/406 (67%), Gaps = 21/406 (5%) Strand=Plus/Plus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| ||| | ||| ||||| Sbjct 5237 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 5296 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | || || |||||||| | | | | | Sbjct 5297 TTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATA 5356 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| || |||| || ||| |||| |||| || ||| | |||| | | Sbjct 5357 TTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCA 5416 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCC-AAG--AGTTCCTTCAGGAT--ATT 59168 || | | | ||||||||| || || | || || ||| | | |||| || | | Sbjct 5417 CCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAAT 5476 Query 59169 CATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACAT 59228 |||| | | || | ||| |||||||| |||| | ||||| || || | Sbjct 5477 AATTT-----CCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACGT 5531 Query 59229 TATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCT 59285 | || || ||| | || |||| || ||||| ||| || |||||||| ||| || | Sbjct 5532 TTTTTTC--TAATA-ATGTATTTCCATTTGTTTCTCCCCTTATAAACCATAGCAACTCTT 5588 Query 59286 TAATG-CAAATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 |||| | | || ||| || |||||||||||| | | ||||| Sbjct 5589 CAATGATACCTCTTACAAATAA-TTTTTTTGTTGTTAATAATGGAA 5633 >seq6062 Length=850 Score = 100 bits (110), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Plus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 133 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 188 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| ||||| Sbjct 189 TATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGTCCATATAATGCAGATTT 248 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| |||||||||||| | |||||||||||| Sbjct 249 TGATGGGGATGAAATGAATTTACATGTACCTCAA 282 >seq3964 Length=1254 Score = 100 bits (110), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 881 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 826 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| ||||| Sbjct 825 TATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGTCCATATAATGCAGATTT 766 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| |||||||||||| | |||||||||||| Sbjct 765 TGATGGGGATGAAATGAATTTACATGTACCTCAA 732 >seq1621 Length=2725 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | || || | | Sbjct 1896 ATAGATCATTACCACATTTTATTAAATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGT 1837 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| ||| || | || ||| ||| |||||||| || | || Sbjct 1836 CAAATTCTTATTTAAGT--GGATTAACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGG 1779 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 1778 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 1719 Query 306427 ATTAATGAAAACGCTTGAAGATATT 306451 |||||| ||| | | |||||| || Sbjct 1718 ATTAATTAAAGCTATGGAAGATGTT 1694 >seq9906 Length=546 Score = 87.8 bits (96), Expect = 4e-12 Identities = 282/434 (65%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 110215 TTGTTACAAAGGAAGTATTTAATGTCGTAAAGAAACATAAAACAAAACTAAATAATATTA 110274 || ||| || ||||||| | || | | | | |||||||| ||||||| | Sbjct 65 TTATTAGTAAAGAAGTATATGATTTTATTATGGAACATAAAGATCGTTTAAATAAAGAAA 124 Query 110275 TCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTT 110334 | |||||||| | || | || ||| |||||||| || ||||| | ||| | ||| Sbjct 125 TAGATTATACAAGAGATTTCAATTATGATTATTTTGGATTTAAAACATTAGAAAGGTCTT 184 Query 110335 ATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTG 110394 | ||| | ||| | ||| | || |||||||||||||| || | || | | || Sbjct 185 ACTTATTACGTATTAATAATAAAATTATTGAACGTCCTCAGCATTTATTAATGAGAGTAT 244 Query 110395 CGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTA 110454 | || || || ||| | ||||| || || | | | ||| |||| || || | Sbjct 245 CTATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAAACTTATCATTTAATGTCAC 304 Query 110455 AAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAAT 110514 |||| | || ||||||||||||||| ||||||| | ||||| || ||| Sbjct 305 AAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAA 364 Query 110515 TGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTC 110574 || |||| |||||| | || ||| || |||||| || |||||||| | ||| | Sbjct 365 TGTCTTCATGCTTTTTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAAC-A 423 Query 110575 TTAAAG-AAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGAT 110633 |||||| || ||| | ||| ||||| | ||||| || ||| | || || ||| Sbjct 424 TTAAAGCAATGTGCATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGAT 483 Query 110634 ATT--CGCTCAAAA 110645 ||| |||||||| Sbjct 484 ATTAGAGCTCAAAA 497 >seq6325 Length=813 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | || |||||| | ||||||||| Sbjct 317 AGACATATGACTGATGAAGATTACATATTATTTAATCGACAGCCATCATTACATAAAATG 376 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| |||| || | || ||||| |||||| || Sbjct 377 AGTATTATGGGACACAAAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTA--- 433 Query 305426 GCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| ||| | || |||||||| |||||||| || ||||||||||| | ||| || | Sbjct 434 GCT-GTAACATCACCATATAATGCCGATTTTGACGGTGATGAAATGAACTTACATTTAGC 492 Query 305482 TCAATC 305487 |||||| Sbjct 493 TCAATC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186650247443090