Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4327 107 5e-18 >seq4327 Length=1153 Score = 107 bits (118), Expect = 5e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || |||||||| |||||| | || || ||| ||||| ||| | ||| Sbjct 709 AAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTGATACAATTGAAAAT 650 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || ||||| |||||||||||| || || |||||| | || || Sbjct 649 GTTAAAGCAAAA-ATCCAAGATAAAGAAGGAATTCCCCCTGATCAACAAAGATTAATTTT 591 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || || ||||||||||| || || | || || ||| | || |||||||| Sbjct 590 CGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAGTC 531 Query 206364 TAC 206366 || Sbjct 530 AAC 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181658931175490