Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq214 96.9 3e-15 seq755 84.2 2e-11 >seq214 Length=6806 Score = 96.9 bits (106), Expect = 3e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| || ||| ||||||||||| || ||||| |||| ||| Sbjct 6582 GCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGGAGATCCCGAGTTCGATC 6641 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 6642 CTCGGTGCCCGTATTT 6657 >seq755 Length=4197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| || ||| | |||||||| || ||||| |||| ||| Sbjct 2214 GCGGGCATGGTCTAGTGGCTATGACGCCTGCCTAACACGCAGGAGATCCCGAGTTCGATC 2155 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 2154 CTCGGTGCCCGTATTT 2139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466062514073600