Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4327 96.9 3e-15 >seq4327 Length=1153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 106252 GTTTA--AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC 106309 ||||| ||||||||||| ||||| |||||||| || || || || || || | || Sbjct 734 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 675 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 674 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 615 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | |||||||||||| | |||| || || ||||||||||||||| | ||| | Sbjct 614 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 555 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| |||||||| || || ||||||| ||| Sbjct 554 TGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGTA 515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402277182739520