Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq376 89.7 8e-13 >seq376 Length=5534 Score = 89.7 bits (98), Expect = 8e-13 Identities = 184/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 160968 TAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGG 161027 |||| | |||||| || || |||||||| || ||| | ||||| || | | || | Sbjct 2085 TAATATTTGGTATCACAGGACAGGATGGGTCATATTTGAGCGAACTACTTTTAGAAAAAG 2026 Query 161028 GGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATC 161087 | |||||||| ||||| | ||| | || | ||||||||| |||||| |||| Sbjct 2025 GATATGAAGTTCATGGGGTGATTAGGAGGTGTAGTACATTTAATACAAAAAGAATAGATC 1966 Query 161088 ATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATAGTCT 161147 |||| || || | ||| | | || || || ||||| ||| || ||| | | Sbjct 1965 ATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATATTTT 1906 Query 161148 CTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGA 161207 || | || || || |||| |||| || || || ||| ||||| |||||||| | Sbjct 1905 CTTTAATATCTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCATGTAA 1846 Query 161208 AAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 ||||| || || |||||||||||||||||| Sbjct 1845 AAGTAAGCTTTGAATTACCTGAATATACAGCACA 1812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729832063157200