Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2587 291 1e-73 seq3686 239 6e-58 seq9906 136 5e-27 >seq2587 Length=1884 Score = 291 bits (322), Expect = 1e-73 Identities = 828/1246 (66%), Gaps = 55/1246 (4%) Strand=Plus/Plus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || |||||| || | ||| || ||||| | |||||| | ||||| |||||| Sbjct 595 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 654 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| || ||| | | || ||| | ||| || | ||| ||| ||||| | Sbjct 655 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTT 714 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| || || || |||| | | || || || |||| ||| | ||| || | Sbjct 715 CCATTATGGGCAATTAATTGTTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 773 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | ||||| ||| ||| || ||| |||| Sbjct 774 ATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAAC---ACGTCTGTA 830 Query 68751 A---ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 | || ||||| ||||||||||| | |||||||||||||| | |||||| | ||||| Sbjct 831 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 890 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || |||||||||||||| | | | | |||||| | || ||| | | ||||| | Sbjct 891 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTT 950 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTG 68924 ||||| | |||||||||| | | ||| ||||||| | ||| |||| Sbjct 951 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 1010 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC--TTCCTGTTCA 68982 || ||||| | ||||| || | ||||| |||||| ||||| || || | Sbjct 1011 TAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT-- 1068 Query 68983 GCTAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTA 69039 || | |||| || || | ||||| ||| | ||||| || ||||| || || ||||| | Sbjct 1069 GCCAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-A 1125 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | |||| |||||| | || ||||||| |||||| ||||||| |||||| Sbjct 1126 TTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCT 1185 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 ||||| || || || || || |||||||||||||| |||||||| ||||| |||||| | Sbjct 1186 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 1245 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACT-ACTTTAACCAC 69218 | ||||||||||| | || |||||||||| | ||||| | || | | |||| | Sbjct 1246 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTC-TAGTAATAATTTTAGTAAT 1304 Query 69219 GTCCTTTAGTTTGAGAAAATCAAA-----TCGTCCATCTAT-AACAAACATATTCAGTGC 69272 || | || ||| ||||| ||| | | ||||| |||||| | | ||| Sbjct 1305 ATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGC 1364 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 | || |||| ||||||||| ||||| |||| || || ||||| || || || Sbjct 1365 AATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 1424 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 |||| |||||| ||||| || || || | ||||| ||||| || ||||| || Sbjct 1425 ACATTAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGC 1484 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 || || || | ||| | || ||||||||| || || | || | ||||| | || Sbjct 1485 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTG-GCTTTG-TAATA---TAGCA 1539 Query 69453 AACGACCCTA--------GCATTTATTACGGTCTTGT---AACGCTTCTCTTTTTCATAT 69501 ||| || || ||| ||| | | || | | | || |||| ||| ||| Sbjct 1540 AAC--CCATAAATCTTGTGCAAGAATT--GTTTTTTTTCCCAAGATTTTCTTCTTCGTAT 1595 Query 69502 TGTGTATAT-AGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATT 69560 | ||||||| | ||| ||||| || ||||| ||| || || |||||||| || Sbjct 1596 TTTGTATATAATTTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTT 1655 Query 69561 TGGACA-CATCAATGACCACACATCATCATCCTTAACTC-GTTTCATAAATAGATCGGGA 69618 || || ||| || | ||| | || ||||| |||| ||||||||||| ||| || Sbjct 1656 AGGGCACCATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTTCATAAATAAATCAGGT 1715 Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678 | ||||| ||| ||| | ||| | | ||| |||||| || || ||||||| | Sbjct 1716 ACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTT 1775 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATA 69724 | ||| | ||| || | |||||| |||||||||||||| | ||||| Sbjct 1776 AAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATA 1821 >seq3686 Length=1345 Score = 239 bits (264), Expect = 6e-58 Identities = 386/550 (70%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| || |||||||||||||| ||||| ||| |||||| | ||| | | | | Sbjct 628 TGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTT 687 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 | ||||| | ||||||||| ||| |||| |||| ||| || || ||||| || | Sbjct 688 TGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACAT 747 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTGCC 39808 ||| || |||| ||| || | || | |||||||| |||||| || |||| Sbjct 748 GCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCCATTTAGCTGCC 804 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AATGTT 39866 || ||||| || |||| || || |||| ||||||| ||| | || ||| | Sbjct 805 CATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTC 864 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 | | || | ||| ||| ||| |||| ||||| | |||||| |||| || || || | Sbjct 865 TCTT-TCTC-ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATAT 922 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||||| || || ||||| | ||||| | | |||||| | |||||||| ||| Sbjct 923 TTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTA 982 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||| | || |||||||| ||||||||||||||||| ||||||||||| | | Sbjct 983 AAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCA 1042 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 ||||||| ||||||| |||||||| | ||||| | |||| || | ||| ||| Sbjct 1043 CATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTG 1102 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 ||| ||||| ||||||||| |||||||| || ||||| || ||||| || | ||||||| Sbjct 1103 ATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATA 1162 Query 40167 TATCACGATA 40176 ||| |||| Sbjct 1163 CTTCAGGATA 1172 >seq9906 Length=546 Score = 136 bits (150), Expect = 5e-27 Identities = 282/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 69795 CATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCG 69854 |||||| | | |||||| ||| ||||||| ||||| || ||| | || | Sbjct 546 CATCGGGACTAAACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCT 487 Query 69855 AATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTT 69914 ||||| | || | |||||| |||||||| ||||| || | ||||| | || Sbjct 486 AATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTT 427 Query 69915 CAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAG 69973 ||||| ||| ||||||| ||||| |||| | |||| | ||| || ||| || || Sbjct 426 TAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAG 368 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 ||||||| | | ||||||| ||||||||||||||||| || ||||| || ||| Sbjct 367 ACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATT 308 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 ||| || | | || || ||||| | ||| ||| | ||| ||| ||||||| Sbjct 307 TTTGTGACATTAAATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTA 248 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 | | || | ||| || | ||||||||| ||||| | |||||||||| || || | Sbjct 247 TAGATACTCTCATTAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATA 188 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 ||| || |||| | |||||||| |||||||| | || ||||| |||||| Sbjct 187 AGTAAGACCTTTCTAATGTTTTAAATCCAAAATAATCATAATTGAAA--TCTCTT 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686817011811600