Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq76 183 2e-41 seq3686 172 4e-38 seq252 150 1e-31 >seq76 Length=8655 Score = 183 bits (202), Expect = 2e-41 Identities = 382/569 (67%), Gaps = 15/569 (3%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTT 19416 ||||| || || ||| || ||||||||||| || ||| || | ||||| ||| | Sbjct 6999 TATGGTCCTCCTGGTACCGGGAAAACATTAATAGCTAGACAAATAGGTAAAACATTAAAT 6940 Query 19417 ACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 ||| | |||| |||||| | ||||| |||||||| |||||||| || ||||||||| Sbjct 6939 GCAAGAGAACCG---AAAATTATCAATGGGCCTGAAATATTAAATAAGTACGTAGGTCAA 6883 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || ||||||||| | || || ||| || |||||| || | || | | || Sbjct 6882 TCTGAAGAAAATATTCGTAACTTATTTAAAGAGGCTGAATTGGAGTATAAGCAATCTGGA 6823 Query 19537 CGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGA 19596 || | || || ||||| ||| ||||||| | || ||||| ||| |||||| Sbjct 6822 GAGAATTCATTATTACATATTATTATATTAGATGAGATAGATGCAATTTGTCGACAAAGA 6763 Query 19597 GGT---------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCA 19647 ||| ||| ||| | || ||| |||| | | | || |||||| | | ||| Sbjct 6762 GGTAGTGCTGCATCTAGTGGATCAGGTGTAAATGATAGTATAGTTAATCAATTATTATCA 6703 Query 19648 AAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTG 19707 ||| |||| || || || | |||||||| || | ||||| ||||| || ||| | Sbjct 6702 AAAATAGATGGAGTAAATAGTTTAAATAATATACTATTAATTGGTATGACAAACAGAATA 6643 Query 19708 GAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAAC 19767 || ||||| || || || ||| |||| ||||| || ||| || | || ||||| Sbjct 6642 GATTTAATCGATGAAGCATTGTTAAGACCAGGTCGATTTGAATTACATATTGAAATATCA 6583 Query 19768 TTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAA 19827 |||||| || || || || | |||| ||||| || |||||| || ||| |||| Sbjct 6582 TTACCCAATAAAGAAGGTCGAATTCAAATATTAAATATTCATACAAAAAATATGAGACAG 6523 Query 19828 AATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTAT 19887 ||||| |||||| | ||||| || |||||||| | |||| ||| || | | Sbjct 6522 AATAATAAATTAAATAAAGATGTTAATATAGAAGAATTAGCAGAAAGAACCCCCAATTTT 6463 Query 19888 AGCGGCGCAGAACTTGAGGGATTAGTGAG 19916 || |||||| |||| |||||||| || Sbjct 6462 TCAGGTGCAGAAATTGAAGGATTAGTAAG 6434 >seq3686 Length=1345 Score = 172 bits (190), Expect = 4e-38 Identities = 561/861 (65%), Gaps = 23/861 (3%) Strand=Plus/Minus Query 43721 TATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAA 43780 |||| ||| ||||| | | || |||||||| |||| ||||||||||| || |||||| Sbjct 1172 TATCCTGAAGTATGGAATTTTTATAAAAAAGCTGAGGCCTCATTTTGGACTGCTGAAGAA 1113 Query 43781 GTTGATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATT 43838 | ||||| | | || || | || ||| | |||||| | | |||||||||| Sbjct 1112 ATAGATTTATCAAGTGATTTGAAAGACTTTGAAAA--ATTAAATGTAAATGAAAAACATT 1055 Query 43839 TTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGG 43898 ||||| || | || |||||||| || || || || ||||| |||||||| | Sbjct 1054 TTATAAAACATGTGCTAGCATTTTTTGCAGCTAGTGATGGAATAGTATTAGAAAATTTAG 995 Query 43899 TTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAA 43958 |||| ||| |||||| ||| || ||||| | ||||||| ||||||| Sbjct 994 CTAGTAAATTTTTAAGAGAAGTACAAATAATTGAAGCCAAAAAGTTTTATGCTTTTCAAA 935 Query 43959 TTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAG 44018 | || | |||||||| || || |||| || ||| | | || |||| || || | | Sbjct 934 TAGCTGTTGAAAATATACACTCTGAAACCTATAGTTTATTAATTGATAATTATATTAGGG 875 Query 44019 ATGGGCACGAGAAGCATCGATTG-TTTAATGCGATAGAAACAGTACCTGCGATTAAACAT 44077 ||| | | |||| | | ||| ||| |||| || |||| |||| || || ||| || Sbjct 874 ATGAGAAAGAGA-GATTAAATTTATTTCATGCTATTGAAAATATACCAGCAATAAAAAAT 816 Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTC 44137 |||||| ||||| ||||||||||||| | | ||||||| ||| || |||| Sbjct 815 AAAGCATTATGGGCAGCTAAATGGATAAATGATACGAACTCTTTTGCTGAAAGAATTGTA 756 Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || |||| ||| ||||| || || ||| ||| ||| || ||||||||||| Sbjct 755 GCTAATGCATGTGTCGAAGGAATATTATTTAGTGGAAGTTTTTGTGCAATATTTTGGTTT 696 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAA 44257 || |||| | | | | ||| || || ||| ||||| || || ||| | |||||| Sbjct 695 AAAAAACAAAATAAATTACATGGTTTAACATTTAGTAATGAATTGATTAGTAGAGATGAA 636 Query 44258 GGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCA 44317 || ||||| |||||| ||| || | | | | | | ||| | |||| || Sbjct 635 GGATTACACACAGATTTTAATTGTTTAATTTATAGCT-TGTTGGAAA--ATAAATTACCA 579 Query 44318 TGTAAGACAATTACAGATATTGTTGTAGAGGCAGT--AA--AGATAGAACAAGAATTTAT 44373 || || | |||| ||| ||| ||||| || ||| ||| || |||| | Sbjct 578 GAAGAGGTTGTTCAAAATATAGTTAAAGAAGCAGTTGAAGTAGAAAGATCATTTATTTGT 519 Query 44374 GACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATAT 44433 || | | |||||| ||||||| ||||||||| | | ||| ||||| || Sbjct 518 GA----ATCTTTACCTTGTGATTTAATTGGAATGAATTCAAGACTTATGTCTCAATACAT 463 Query 44434 TGAATACATTGCAGATCGTTTACTTTTGGAA---CTGGGTTGCGATAAACACTATATTGT 44490 ||||| |||| ||||| ||| || ||| | |||||| ||| | | Sbjct 462 TGAATTTGTTGCTGATCGATTA---TTAGAATGTTTAGGTTGCTCCAAAGTTTTCCATTC 406 Query 44491 ACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGA 44550 | |||| || ||| || ||||| || || || |||| |||||||| || ||||| Sbjct 405 AAAAAATCCATTTAGTTGGATGGACTTAATATCTTTACAAGGAAAAACAAATTTCTTTGA 346 Query 44551 AAAACGCGTTGGAGAATATCA 44571 ||| | |||| ||| ||||| Sbjct 345 AAAGAGAGTTGCAGATTATCA 325 >seq252 Length=6430 Score = 150 bits (166), Expect = 1e-31 Identities = 271/391 (69%), Gaps = 4/391 (1%) Strand=Plus/Minus Query 40875 GGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC-TATGTACTC 40933 ||||| |||| |||||||| | | | || ||||| || ||||| ||| |||| | | Sbjct 5451 GGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATAT-ACAGATATGCATGC 5393 Query 40934 TGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGA 40993 |||||||| ||||||| | ||||| ||| | ||||| || |||||| ||| Sbjct 5392 TGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTAAAAACGA 5333 Query 40994 TCCCGATA-GCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGG 41052 ||| || | | |||| || || || || || ||||| || || || || |||| Sbjct 5332 TCC-GACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATTTAGATCAAATGG 5274 Query 41053 CATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTC 41112 |||| || ||||||||| | |||||||| ||||| |||| |||| || | |||||| Sbjct 5273 CATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTATCATGTA 5214 Query 41113 AATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATG 41172 ||||||||||||| |||| | || || || || || || || || || ||| Sbjct 5213 TTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATATTGCTTCCTATT 5154 Query 41173 CTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACA 41232 || | | || |||||||| ||||| || |||||| |||| | ||||||| | || Sbjct 5153 CTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTTATACATG 5094 Query 41233 CGTTAGGAGATGGACATATTTACATTAATCA 41263 || ||| ||| ||| |||| | |||||| Sbjct 5093 TATTGGGAAATGCTCATGTTTATAATAATCA 5063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397404217693450