Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2587 109 5e-19 seq4327 104 2e-17 >seq2587 Length=1884 Score = 109 bits (120), Expect = 5e-19 Identities = 295/445 (66%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| ||| || | || |||||||| || | || |||| | ||| || ||| Sbjct 595 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 654 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| |||| || || | || | | || | ||||| ||| ||| ||||||| || Sbjct 655 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTT-CGCTAATATATTGAACACT 713 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | ||| || | || |||| |||| || ||| | | || | | || Sbjct 714 TCCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAA 772 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||||| | || |||||| | || ||||| | Sbjct 773 GATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTAAT 832 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||||||||| || || || || ||||||| || | | Sbjct 833 AAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAG 892 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | |||||||| | | ||||| | | |||||| | Sbjct 893 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTT 952 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | || || |||||||||||||||| Sbjct 953 TTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATT 1009 Query 130971 GTAGTATGCCTTTACTGGCGGGACT 130995 ||| ||| |||| || || ||||| Sbjct 1010 GTAATATTCCTTGGCTTGCTGGACT 1034 >seq4327 Length=1153 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | ||||| | | |||| Sbjct 515 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTC-CATCTT 573 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || ||| |||| | | |||||||| || || | || |||||||| Sbjct 574 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 633 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || || | | |||||| || ||||| || | || Sbjct 634 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 693 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 694 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424879037687280