Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2587 116 5e-21 >seq2587 Length=1884 Score = 116 bits (128), Expect = 5e-21 Identities = 333/501 (66%), Gaps = 11/501 (2%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| |||| |||||||||||| |||||||||| || || ||||||| || || Sbjct 832 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 891 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTTC 110826 ||||||||||| ||||| | | |||| || | | || | | | ||| | || Sbjct 892 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 951 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAACT 110882 || | || |||||| || || || | | ||| | |||| |||| ||||| | Sbjct 952 TTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAATT 1009 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | |||||| || ||| ||| | | | | |||||| | || ||| | Sbjct 1010 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 1069 Query 110943 CCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 1070 CCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTT 1128 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 1129 AATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 1188 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAAC 111120 ||||| || || | ||||||||||| |||| |||| || ||||| ||| | ||| Sbjct 1189 CCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAAC 1247 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 1248 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 1307 Query 111181 ATGAAGTTTTTCATAATCAAA 111201 || | ||||| | ||| ||| Sbjct 1308 ATATAATTTTTTAAAATTAAA 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627948079224000