Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2587 114 2e-20 >seq2587 Length=1884 Score = 114 bits (126), Expect = 2e-20 Identities = 448/696 (64%), Gaps = 9/696 (1%) Strand=Plus/Minus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAA 104967 |||| || |||||| |||||| ||| | || ||||| || ||||| | ||| | || Sbjct 1523 CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AA 1465 Query 104968 TCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTAC 105027 |||||| ||||| || || || | ||| ||| ||||| | |||| ||| Sbjct 1464 TCAAAAAAATTTAGGAACAATTAAATGCAGTAATTAATGTTGTGAAATTATTGAATATAC 1405 Query 105028 AGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA 105087 | ||||| ||||| ||||| | || || || || | ||| | ||| || Sbjct 1404 ATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATTTGTTGA 1345 Query 105088 TCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAA 105147 | ||| | ||| |||| ||| | ||||| | | || |||| |||| | | || | Sbjct 1344 TAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAG 1285 Query 105148 AAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAA 105207 ||| || | | | ||||||| ||||||| ||| || ||| | || | ||| || Sbjct 1284 AAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAA 1225 Query 105208 TATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTG 105267 || ||||| | || ||||| | || || || || | || ||| ||| || |||| Sbjct 1224 TAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTT 1165 Query 105268 TCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCAT 105327 | | ||| ||| || || ||||| || ||| | ||| | |||||||| || || Sbjct 1164 AAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTAT 1105 Query 105328 GTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAAC 105387 |||| | || ||| | || | | || |||||| | || ||| ||||||||| | Sbjct 1104 GTATTATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATC 1045 Query 105388 CTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC 105447 | | | ||| |||||| ||||| | | ||||||||||||| |||| | | | Sbjct 1044 ATATCAAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAG 986 Query 105448 CA-AGCTTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTT 105502 | | | | || || |||| | | | || || | ||| | | | || | Sbjct 985 TAGATAATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTAAACACGGATTA 927 Query 105503 CGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 105562 | || ||| || | || || ||||||||||| || || ||||||| || || ||| Sbjct 926 AGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAAT 867 Query 105563 AATGAATGCTTTGAACCCTACACGACGAACATCTAT 105598 ||||||| ||||||||| || || | ||||| ||| Sbjct 866 AATGAATCCTTTGAACCATATACAAGTAACATTTAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182861775600