Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq1134 102 4e-17 >seq1134 Length=3426 Score = 102 bits (112), Expect = 4e-17 Identities = 184/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 65117 AAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAA 65176 ||||| |||||||||||||| | ||| | || ||||| ||||| | | | ||| Sbjct 2530 AAATTTATATTGTTTGAACCGACAAATGTTTGCGCCATATTTATAATAGTTTGTTGTAAT 2589 Query 65177 CTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACT 65236 | |||||| ||||||||| | |||||| | | ||| ||| || || || ||| Sbjct 2590 GATGATTCACCATGATGATATGCACTATGTTCTGCAATATAACCAACAAGCTGCGCGACT 2649 Query 65237 TTTATTTCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATT 65296 || ||| || ||||||| ||||||| | ||| || | ||| | | | | Sbjct 2650 TTACATTCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCTGGT 2709 Query 65297 TTCAATCCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATG 65356 ||| |||||||||| | ||| || || ||||| || ||||||| | || ||| ||| Sbjct 2710 TTCCATCCATCCATAATATTTGGTATACTTCTTTCTGTATCATATCTAGAATAATATATT 2769 Query 65357 AATTCTTTGTTAATAAATTCTTCATATGA 65385 |||||||| || | ||| || | |||||| Sbjct 2770 AATTCTTTATTTACAAAATCATAATATGA 2798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235649294578500