Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4327 98.7 6e-16 >seq4327 Length=1153 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || ||| |||||||||||||| || || | ||||| | ||||| Sbjct 516 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 575 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | |||||| || || || ||||| | ||||| || || || | ||| || || ||| | Sbjct 576 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 635 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 || ||||| |||||| | |||||| || || || || | || || ||||| Sbjct 636 AT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 694 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 |||||||| ||||| ||||| || ||||| || Sbjct 695 TCCGGTTAATGTTTTTACAAAGATTTGCATTTT 727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688595650770