Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[genbank_20GCA_5F000003075.2_2020 04-12-09] 10,690 sequences; 16,893,362 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq763 89.7 6e-13 >seq763 Length=4184 Score = 89.7 bits (98), Expect = 6e-13 Identities = 268/406 (66%), Gaps = 17/406 (4%) Strand=Plus/Plus Query 136368 AAACTGGCAACATCAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGG 136427 ||||| | | || ||||||||||||| | |||| |||||||| ||| | || | | Sbjct 1681 AAACTTGTAGCACCAGGAAAGGGAATTTTAGCTGCAGATGAATCAACACAAACAATTAAG 1740 Query 136428 AAAAGATTGGCTAGTATTGGAGTAGAAAATACAGAGGCAAATAGACAGGCATACAGAGGT 136487 |||||||| | || ||| | | || ||||| | | ||||||| || |||| | Sbjct 1741 AAAAGATTCGATAATATAAAAATCGAGAATACCGTTGAAAATAGAGCTAACTATAGAGAT 1800 Query 136488 ATGTTATTTACCACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGAA 136547 | |||||| || | |||||||| || | ||| ||||| || |||||||||||| Sbjct 1801 TTATTATTTGGAACTAAAGGATTAGGAAAATTCATTTCAGGTGCAATTTTATTTGAAGAA 1860 Query 136548 ACACTATTTCAAGATCATGCTGATGGAGAAAGCATGATTGCAAA---GTTAGAGAAGCAA 136604 || |||| ||| | ||| | ||| | | ||| | | ||| ||| | | || Sbjct 1861 ACTTTATTCCAAAAAAATGAAGCTGGTG-TACCAT--TAGTAAACTTATTACATGATGAA 1917 Query 136605 GGAATTATACCAGGTATCAAGGTAGATAAAGGATTAAAACCATTAGT---TGGTGCATTA 136661 | || |||||||| || || || || ||||| ||| ||||| || | | Sbjct 1918 GATATAATACCAGGAATTAAAGTTGACAAAGGTTTA-----GTTAGTATCCCATGTACT- 1971 Query 136662 GAGCATGAGACATATTGTTCTGGATTAGATGGTCTAACAGAAA-GAGCAAGTGACTATTA 136720 || |||| | || || |||||||| || |||||| | |||| || ||||| Sbjct 1972 GACGATGAAAAATCAACCCAAGGTTTAGATGGATTAGCAGAAAGGTGCAA-AGAATATTA 2030 Query 136721 TGGTAGAGGTGCAAGATTTGCTAAGTGGAGAGCAGTTCTACAAATT 136766 | |||||||| ||||| || |||||||||||| || |||| Sbjct 2031 TAAAGCTGGTGCAAGGTTTGCAAAATGGAGAGCAGTTTTAGTAATT 2076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631342825540400